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Name: | norR |
Gene(s): | norR Genome Browser M3D Gene expression COLOMBOS |
Note(s): | In assay experiments, it was demonstrated that disruption of any one of the three sites of the NorR transcriptional regulator prevented autogenous repression of norR transcription. All three sites are required not only for activation of the norVW operon but also for repression of the norR gene, since NorR acts cooperatively Tucker NP,2006. |
Evidence: | [AISDTU] Automated inference that a single-gene directon is a transcription unit |
Promoter | |
Name: | norRp |
+1: | 2832307 |
Distance from start of the gene: | 18 |
Sequence: |
ttaatgagtagtcaaaatgactatcaatcaaatggtcgatatgacaatatctatagtcaaAttgacagtgaggcaaagatg |
Evidence: | [TIM] |
Reference(s): | [1] Tucker NP., et al., 2006 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | NorR | repressor | norRp | 2832301 | 2832313 | 1.0 | caatatctatAGTCAAATTGACAgtgaggcaaa | nd | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1], [2], [3], [4] |
proximal | NorR | repressor | norRp | 2832322 | 2832334 | -21.0 | tcaatcaaatGGTCGATATGACAatatctatag | nd | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1], [2], [3], [4] |
proximal | NorR | repressor | norRp | 2832346 | 2832358 | -45.0 | attaatgagtAGTCAAAATGACTatcaatcaaa | nd | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1], [2], [3], [4] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | NsrR | repressor | norRp | 2832282 | 2832293 | 21.0 | acagtgaggcAAAGATGAGTTTttccgttgat | nd | [APIORCISFBSCS], [CV(GEA)], [GEA] | [5] |
Name: | norR |
Gene(s): | norR Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [AISDTU] Automated inference that a single-gene directon is a transcription unit |
RNA cis-regulatory element | ![]() |
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Regulation, transcriptional elongation | |
Attenuator type: | Translational |
Strand: | reverse |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
---|---|---|---|---|---|
terminator | -8.4 | 2832302 | 2832333 | caatcaaatgGTCGATATGACAATATCTATAGTCAAATTGAcagtgaggca |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
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