RegulonDB RegulonDB 10.8: Operon Form

hdfR operon and associated TUs in Escherichia coli K-12 genome

Name: hdfR
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: hdfR
Gene(s): hdfR   Genome Browser M3D Gene expression COLOMBOS
Note(s): Disruption of the rbsK, rbsR, hdfR, and crl genes decrease resistance to high hydrostatic pressure (HHP) 30497599
Evidence: [AISDTU] Automated inference that a single-gene directon is a transcription unit
Name: hdfRp
+1: 3948021
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 54
Sequence: cacgctcctaattctttgaccgagctagttatggcgcggagtattagttacgcttgacagAgtgtaaaacaaaacatttaa
                         -35                -10             +1                   
Evidence: [IHBCE]
Reference(s): [1] Gama-Castro S., et al., 2008
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd H-NS repressor hdfRp nd nd nd nd nd [BPP] [2]