RegulonDB RegulonDB 11.0: Operon Form

agaR operon and associated TUs in Escherichia coli K-12 genome

Name: agaR
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: agaR
Gene(s): agaR   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISGDTU] Automated inference that a single-gene directon is a transcription unit
Name: agaRp
+1: 3278703
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 38
Sequence: agcttgcgtcaatgggcaaggtgggcttgcatttgcttaatagaaaggcgttaataggcaAaacgaaatgaaacgaaagtt
                                 -35                   -10  +1                   
Evidence: [HIPP]
Reference(s): [1] Huerta AM., et al., 2003
[2] Ray WK., et al., 2004
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal AgaR repressor agaRp 3278686 3278705 8.5 cgttaataggCAAAACGAAATGAAACGAAAgttttacgaa nd [GEA], [APIORCISFBSCS], [BPP] [2]
proximal AgaR repressor agaRp 3278713 3278732 -19.5 tgggcttgcaTTTGCTTAATAGAAAGGCGTtaataggcaa nd [GEA], [APIORCISFBSCS], [BPP] [2]