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Name: | agaR | ||||||||||
Gene(s): | agaR Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [COMP-AINF-SINGLE-DIRECTON] Automated inference that a single-gene directon is a transcription unit | ||||||||||
Promoter | |||||||||||
Name: | agaRp | ||||||||||
+1: | 3278703 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 38 | ||||||||||
Sequence: |
agcttgcgtcaatgggcaaggtgggcttgcatttgcttaatagaaaggcgttaataggcaAaacgaaatgaaacgaaagtt -35 +10 |
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Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
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Reference(s): |
[1] Huerta AM., et al., 2003 [2] Ray WK., et al., 2004 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | AgaR | repressor | agaRp | 3278686 | 3278705 | 8.5 | cgttaataggCAAAACGAAATGAAACGAAAgttttacgaa | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-DAP-SEQ], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | C | [2] |
proximal | AgaR | repressor | agaRp | 3278713 | 3278732 | -19.5 | tgggcttgcaTTTGCTTAATAGAAAGGCGTtaataggcaa | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-DAP-SEQ], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | C | [2] |
Reference(s) |
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