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Name: | astCADBE |
Gene(s): | astE, astB, astD, astA, astC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [IEP] Inferred from expression pattern [ITCR] Inferred through co-regulation |
Reference(s): | [1] Schneider BL., et al., 1998 |
Promoter | |
Name: | astCp1 |
+1: | 1832013 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 31 |
Sequence: |
ggctggcacgaaccctgcaatctacatttacagcgcaaacattacttattattaacatatAaataacgaattatttactgt -35 -10 +1 |
Evidence: |
[HIPP] [ICWHO] |
Reference(s): |
[2] Fraley CD., et al., 1998 [3] Huerta AM., et al., 2003 |
Name: | astCADBE |
Gene(s): | astE, astB, astD, astA, astC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [IEP] Inferred from expression pattern [ITCR] Inferred through co-regulation |
Reference(s): | [1] Schneider BL., et al., 1998 |
Promoter | |
Name: | astCp3 |
+1: | 1832039 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 57 |
Sequence: |
tccgccgtttatgcacttttatcactggctggcacgaaccctgcaatctacatttacagcGcaaacattacttattattaa -35 -10 +1 |
Evidence: |
[APIORCISFBSCS] [CV(RPF/TIM)] [HIPP] [ICWHO] [RPF] [TIM] |
Reference(s): |
[2] Fraley CD., et al., 1998 [3] Huerta AM., et al., 2003 [4] Kiupakis AK., et al., 2002 |
Name: | astCADBE | |||||||||
Gene(s): | astE, astB, astD, astA, astC Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [BTEI] Boundaries of transcription experimentally identified [IEP] Inferred from expression pattern [ITCR] Inferred through co-regulation |
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Reference(s): | [1] Schneider BL., et al., 1998 | |||||||||
Promoter | ||||||||||
Name: | astCp2 | |||||||||
+1: | 1832044 | |||||||||
Sigma Factor: | Sigma54 Sigmulon | |||||||||
Distance from start of the gene: | 62 | |||||||||
Sequence: |
tagcctccgccgtttatgcacttttatcactggctggcacgaaccctgcaatctacatttAcagcgcaaacattacttatt -24 -12 +1 |
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Note(s): | The expression of this promoter is induced in cells growing exponentially in nitrogen-limited minimal medium Fraley CD,1998 | |||||||||
Evidence: |
[APIORCISFBSCS] [CV(RPF/TIM)] [HIPP] [ICWHO] [RPF] [TIM] |
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Reference(s): |
[2] Fraley CD., et al., 1998 [3] Huerta AM., et al., 2003 [4] Kiupakis AK., et al., 2002 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | ArgR-L-arginine | activator | astCp2 | 1832083 | 1832100 | -47.5 | tccagttagcCTCCGCCGTTTATGCACTtttatcactg | nd | [GEA], [AIBSCS], [BPP] | [4] |
proximal | ArgR-L-arginine | activator | astCp2 | 1832114 | 1832131 | -78.5 | atgcatatggTTTGGTTATAACTCCTTGatttccagtt | nd | [GEA], [AIBSCS], [BPP] | [4] |
remote | ArgR-L-arginine | activator | astCp2 | 1832135 | 1832152 | -99.5 | ttcactttatATGCACTTTAAATGCATAtggtttggtt | nd | [GEA], [AIBSCS], [BPP] | [4] |
remote | ArgR-L-arginine | activator | astCp2 | 1832157 | 1832174 | -121.5 | attcacccacATCGCAAACGTATTCACTttatatgcac | nd | [EME], [GEA], [AIBSCS], [AIBSPD], [BPP], [CEE] | [4], [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | NtrC-phosphorylated | activator | astCp2 | 1832269 | 1832285 | -233.0 | tggtgcgcgcTGCGTCAGAATGGCGCAgtaatttcca | nd | [GEA], [AIBSCS], [BPP] | [4] |
remote | NtrC-phosphorylated | activator | astCp2 | 1832289 | 1832305 | -253.0 | gcgcaaaaaaTGCCCGCTTTTGGTGCGcgctgcgtca | nd | [GEA], [AIBSCS], [BPP] | [4] |
remote | NtrC-phosphorylated | activator | astCp2 | 1832311 | 1832327 | -275.0 | gttgttaatgATGTCAACGATGGCGCAaaaaatgccc | nd | [GEA], [AIBSCS], [BPP] | [4] |
Reference(s) |
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