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Name: | astCADBE |
Gene(s): | astE, astB, astD, astA, astC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [IEP] Inferred from expression pattern [ITC] Inferred through co-regulation |
Reference(s): | [1] Schneider BL., et al., 1998 |
Promoter | |
Name: | astCp1 |
+1: | 1832013 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 31 |
Sequence: |
ggctggcacgaaccctgcaatctacatttacagcgcaaacattacttattattaacatatAaataacgaattatttactgt -35 -10 +1 |
Evidence: | [HIPP] |
Reference(s): | [2] Fraley CD., et al., 1998 |
Name: | astCADBE |
Gene(s): | astE, astB, astD, astA, astC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [IEP] Inferred from expression pattern [ITC] Inferred through co-regulation |
Reference(s): | [1] Schneider BL., et al., 1998 |
Promoter | |
Name: | astCp3 |
+1: | 1832039 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 57 |
Sequence: |
tccgccgtttatgcacttttatcactggctggcacgaaccctgcaatctacatttacagcGcaaacattacttattattaa -35 -10 +1 |
Note(s): | The expression of this promoter is induced in cells in stationary phase in nitrogen-limited medium lacking glucose. |
Evidence: |
[CV(RPF)] [CV(RPF/TIM)] [CV(TIM)] [HIPP] [RPF] [TIM] |
Reference(s): |
[2] Fraley CD., et al., 1998 [3] Kiupakis AK., et al., 2002 |
Name: | astCADBE |
Gene(s): | astE, astB, astD, astA, astC Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [IEP] Inferred from expression pattern [ITC] Inferred through co-regulation |
Reference(s): | [1] Schneider BL., et al., 1998 |
Promoter | |
Name: | astCp2 |
+1: | 1832044 |
Sigma Factor: | Sigma54 Sigmulon |
Distance from start of the gene: | 62 |
Sequence: |
tagcctccgccgtttatgcacttttatcactggctggcacgaaccctgcaatctacatttAcagcgcaaacattacttatt -24 -12 +1 |
Note(s): | The expression of this promoter is induced in cells growing exponentially in nitrogen-limited minimal medium Fraley CD,1998 |
Evidence: |
[CV(RPF)] [CV(RPF/TIM)] [CV(TIM)] [HIPP] [RPF] [TIM] |
Reference(s): |
[2] Fraley CD., et al., 1998 [3] Kiupakis AK., et al., 2002 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | ArgR-L-arginine1 | activator | astCp2 | 1832083 | 1832100 | -47.5 | tccagttagcCTCCGCCGTTTATGCACTtttatcactg | nd | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3] |
proximal | ArgR-L-arginine2 | activator | astCp2 | 1832114 | 1832131 | -78.5 | atgcatatggTTTGGTTATAACTCCTTGatttccagtt | nd | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3] |
remote | ArgR-L-arginine3 | activator | astCp2 | 1832135 | 1832152 | -99.5 | ttcactttatATGCACTTTAAATGCATAtggtttggtt | nd | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3] |
remote | ArgR-L-arginine4 | activator | astCp2 | 1832157 | 1832174 | -121.5 | attcacccacATCGCAAACGTATTCACTttatatgcac | nd | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | NtrC-Pasp | activator | astCp2 | 1832269 | 1832285 | -233.0 | tggtgcgcgcTGCGTCAGAATGGCGCAgtaatttcca | nd | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3] |
remote | NtrC-Pasp | activator | astCp2 | 1832289 | 1832305 | -253.0 | gcgcaaaaaaTGCCCGCTTTTGGTGCGcgctgcgtca | nd | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3] |
remote | NtrC-Pasp | activator | astCp2 | 1832311 | 1832327 | -275.0 | gttgttaatgATGTCAACGATGGCGCAaaaaatgccc | nd | [AIBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3] |
Note(s): |
1ArgR enhances expression from the astCp2 promoter but is not essential for its expression Kiupakis AK,2002. 2ArgR enhances expression from the astCp2 promoter but is not essential for its expression Kiupakis AK,2002. 3ArgR enhances expression from the astCp2 promoter but is not essential for its expression Kiupakis AK,2002. 4ArgR enhances expression from the astCp2 promoter but is not essential for its expression Kiupakis AK,2002.4ArgR enhances expression from the astCp2 promoter but is not essential for its expression Kiupakis AK,2002. 5ArgR enhances expression from the astCp2 promoter but is not essential for its expression Kiupakis AK,2002. 6ArgR enhances expression from the astCp2 promoter but is not essential for its expression Kiupakis AK,2002. 7ArgR enhances expression from the astCp2 promoter but is not essential for its expression Kiupakis AK,2002. |
Reference(s) |
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