RegulonDB RegulonDB 10.9: Operon Form
   

chpSB operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: chpSB
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: chpSB
Gene(s): chpS, chpB   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Blattner FR., et al., 1997
Promoter
Name: chpSp1
+1: 4448402
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 45
Sequence: atctattaacgcataaaaaactctgctggcattcacaaatgcgcaggggtaaaacgtttcCtgtagcaccgtgagttatac
                          -35                     -10       +1                   
Evidence: [HIPP]
[ICWHO]
[IMP]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[3] Santos Sierra S., et al., 1998
[4] Weiss DL., et al., 1986


Transcription unit       
Name: chpSB
Gene(s): chpS, chpB   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Blattner FR., et al., 1997
Promoter
Name: chpSp2
+1: 4448428
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 19
Sequence: tggcattcacaaatgcgcaggggtaaaacgtttcctgtagcaccgtgagttatactttgtAtaacttaaggaggtgcagat
                              -35                  -10      +1                   
Evidence: [HIPP]
[ICWHO]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[3] Santos Sierra S., et al., 1998
[4] Weiss DL., et al., 1986


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -19.3 4448242 4448274 taaccatatgCATACGCCACCTTCGGGTGGCGTTGTTTTTTGcgagacgact
  anti-terminator -6.2 4448209 4448250 attgaaagcgGCGACTGGTTAGACAGGGATAAGTAACCATATGCATACGCCaccttcgggt
  anti-anti-terminator -9.5 4448177 4448219 tttatcaacgACCCGTCGATGGATTAAAGCTAATTGAAAGCGGCGACTGGTTagacagggat
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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