RegulonDB RegulonDB 11.1: Operon Form
   

ydeA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ydeA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ydeA
Gene(s): ydeA   Genome Browser M3D Gene expression COLOMBOS
Promoter
Name: ydeAp
+1: 1616955
Distance from start of the gene: 73
Sequence: ctctctgacgcgtgaaagaatcagcgtcagagaaacggaaaacgcgatccagatcacaaaTgcattgtattcacatcatta
Evidence: [COMP-HINF-POSITIONAL-IDENTIFICATION]
Reference(s): [1] Bost S., et al., 1999
TF binding sites (TFBSs)
[ArcA,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal ArcA-phosphorylated repressor ydeAp 1616963 1616977 16.0 aatgcattgtATTCACATCATTAACcgttttaaga nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [2]


Evidence    

 [COMP-HINF-POSITIONAL-IDENTIFICATION] Human inference of promoter position

 [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis

 [COMP-AINF-SIMILAR-TO-CONSENSUS] Automated inference based on similarity to consensus sequences


Reference(s)    

 [1] Bost S., Silva F., Belin D., 1999, Transcriptional activation of ydeA, which encodes a member of the major facilitator superfamily, interferes with arabinose accumulation and induction of the Escherichia coli arabinose PBAD promoter., J Bacteriol 181(7):2185-91

 [2] Liu X., De Wulf P., 2004, Probing the ArcA-P modulon of Escherichia coli by whole genome transcriptional analysis and sequence recognition profiling., J Biol Chem 279(13):12588-97

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