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Name: | flgMN |
Gene(s): | flgN, flgM Genome Browser M3D Gene expression COLOMBOS |
Promoter | |
Name: | flgMp |
+1: | 1130165 |
Sigma Factor: | Sigma28 Sigmulon |
Distance from start of the gene: | 37 |
Sequence: |
gaatattcttataaacctgtaagctgttaaagattacccgtcccttgccgataaataagcAacacatgataaaagcgccct -35 -10 +1 |
Note(s): | The sequence of this promoter has been defined, by computational analyses, from consensus sequence of the σ28 (σF) promoters: TAAAGTTT in the -35 box and GCCGATAA in the -10 box Park K,2001. Ko M,2000. Ide N,1999. Therefore, we assigned a putative transcription start site for this promoter based on the observation that the majority of the σ28 promoters, determined experimentally, present an important -10 motif (5'-CGA-3') at the positions -12 to -10 and a distance of 6 nucleotides between the transcription start site and the -10 box 16855242. Yu HH,2006. Park K,2001. |
Evidence: | [HIPP] |
Reference(s): |
[1] Chilcott GS., et al., 2000 [2] Ide N., et al., 1999 [3] Ko M., et al., 2000 [4] Park K., et al., 2001 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CsgD | repressor | flgMp | 1130142 | 1130156 | 17.5 | caacacatgaTAAAAGCGCCCTCAAtgaggaataa | nd | [APIORCISFBSCS], [BPP] | [5] |
proximal | CsgD | repressor | flgMp | 1130158 | 1130172 | 1.5 | cttgccgataAATAAGCAACACATGataaaagcgc | nd | [APIORCISFBSCS], [BPP] | [5] |
Name: | flgAMN |
Gene(s): | flgN, flgM, flgA Genome Browser M3D Gene expression COLOMBOS |
Note(s): | In a study where it was shown that the L-tryptophan eradicated persister cells, it was observed that the exogenous amino acid downregulated the expression of flgAMN as well as other flagellar genes 31271063. |
Reference(s): | [6] Macnab RM. 1992 |
Promoter | |
Name: | flgAp |
+1: | 1130885 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 22 |
Sequence: |
cgcaaaatgggtcgctatttatgccgttgatggtcattgcggacaggtacaattcacgttGtagaaatggctgggggcgaa -35 -10 +1 |
Note(s): | We assigned a putative transcriptional start site to this promoter based on the observation that the majority of the promoters, whose transcriptional start sites were determined experimentally, present a distance of 6 nucleotides between the transcriptional start site and the -10 box. |
Evidence: | [HIPP] |
Reference(s): | [7] Stafford GP., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | FlhDC | activator | flgAp | 1130917 | 1130933 | -40.0 | caaaatgggtCGCTATTTATGCCGTTGatggtcattg | nd | [APIORCISFBSCS], [CV(GEA)], [GEA] | [7] |
proximal | FlhDC | activator | flgAp | 1130945 | 1130961 | -68.0 | tacgcgcgcgTTATCGGCGGAATAAACgcaaaatggg | nd | [APIORCISFBSCS], [CV(GEA)], [GEA] | [7] |