RegulonDB RegulonDB 10.8: Operon Form
   

ycgR operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ycgR
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ycgR
Gene(s): ycgR   Genome Browser M3D Gene expression COLOMBOS
Promoter
Name: ycgRp
+1: 1244556
Sigma Factor: Sigma28 Sigmulon
Distance from start of the gene: 29
Sequence: catgtaaaaaatattcacgcatttgtattaagttttgttaactgtgaccgataaaccaaaGacagtttgtcagtcaggagt
                            -35                -10          +1                   
Evidence: [AIPP]
[HIPP]
Reference(s): [1] Ko M., et al., 2000
[2] Zhao K., et al., 2007
TF binding sites (TFBSs)
[FlhDC,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd FlhDC activator ycgRp nd nd nd nd nd [GEA] [1]


Evidence    

 [AIPP] Automated inference of promoter position

 [HIPP] Human inference of promoter position

 [GEA] Gene expression analysis


Reference(s)    

 [1] Ko M., Park C., 2000, Two novel flagellar components and H-NS are involved in the motor function of Escherichia coli., J Mol Biol 303(3):371-82

 [2] Zhao K., Liu M., Burgess RR., 2007, Adaptation in bacterial flagellar and motility systems: from regulon members to 'foraging'-like behavior in E. coli., Nucleic Acids Res 35(13):4441-52

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