RegulonDB RegulonDB 10.7: Operon Form
   

pth-ychF operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: pth-ychF
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ychF
Gene(s): ychF   Genome Browser M3D Gene expression COLOMBOS
Note(s): Overexpression of YchF results in H2 O2 hypersensitivity |CITS:[23139412]|.
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Cruz-Vera LR., et al., 2002
Promoter
Name: ychFp
+1: 1257882
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 70
Sequence: ttaaagcgcaataagtcgttgtctgcggcatttttgccgagtgccgtgtataataggcaaAgttatttccatttctgcaat
                       -35                       -10        +1                   
Evidence: [HIPP]
[RS-EPT-CBR]
[TIM]
Reference(s): [1] Cruz-Vera LR., et al., 2002
[2] Salgado H, et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote OxyR repressor ychFp 1257843 1257859 31.5 tctgcaatctGTTAGCAATAACAGGTTgattattaag nd [APIORCISFBSCS], [BPP] [3]
proximal OxyR repressor ychFp 1257865 1257881 9.5 aataggcaaaGTTATTTCCATTTCTGCaatctgttag nd [APIORCISFBSCS], [BPP] [3]


Transcription unit       
Name: pth-ychF
Gene(s): ychF, pth   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Cruz-Vera LR., et al., 2002
Promoter
Name: pthp
+1: 1258542
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 29
Sequence: tatctgcatttgatacgcagttttttgtcaagcggggccgcaaccagtaaactacgcgccAgttatgtacacactcaggac
                         -35                    -10         +1                   
Evidence: [HIPP]
[TIM]
Reference(s): [1] Cruz-Vera LR., et al., 2002





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