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Name: | ychF |
Gene(s): | ychF Genome Browser M3D Gene expression COLOMBOS |
Note(s): | Overexpression of YchF results in H2 O2 hypersensitivity Wenk M,2012 |
Evidence: | [LTED] Length of transcript experimentally determined |
Reference(s): | [1] Cruz-Vera LR., et al., 2002 |
Promoter | |
Name: | ychFp |
+1: | 1257882 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 70 |
Sequence: |
ttaaagcgcaataagtcgttgtctgcggcatttttgccgagtgccgtgtataataggcaaAgttatttccatttctgcaat -35 -10 +1 |
Evidence: |
[CV(RS-EPT-CBR)] [CV(TIM)] [HIPP] [RS-EPT-CBR] [TIM] |
Reference(s): |
[1] Cruz-Vera LR., et al., 2002 [2] Salgado H, et al., 2012 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | OxyR | repressor | ychFp | 1257843 | 1257859 | 31.5 | tctgcaatctGTTAGCAATAACAGGTTgattattaag | nd | [APIORCISFBSCS], [BPP] | [3] |
proximal | OxyR | repressor | ychFp | 1257865 | 1257881 | 9.5 | aataggcaaaGTTATTTCCATTTCTGCaatctgttag | nd | [APIORCISFBSCS], [BPP] | [3] |
Name: | pth-ychF |
Gene(s): | ychF, pth Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [LTED] Length of transcript experimentally determined |
Reference(s): | [1] Cruz-Vera LR., et al., 2002 |
Promoter | |
Name: | pthp |
+1: | 1258542 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 29 |
Sequence: |
tatctgcatttgatacgcagttttttgtcaagcggggccgcaaccagtaaactacgcgccAgttatgtacacactcaggac -35 -10 +1 |
Evidence: |
[HIPP] [TIM] |
Reference(s): | [1] Cruz-Vera LR., et al., 2002 |
Reference(s) |
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