|
|
| Operon |  |
|---|---|
| Name: | metNIQ |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | metNIQ | |||||||||
| Synonym(s): | abc | |||||||||
| Gene(s): | metQ, metI, metN Genome Browser M3D Gene expression COLOMBOS | |||||||||
| Note(s): | A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for metQ . This structure could regulate the expression of the gene, as observed for hemL gene expression Shao X, Zhang W, Umar MI, Wong HY, Seng Z, Xie Y, Zhang Y, Yang L, Kwok CK, Deng X,2020. |
|||||||||
| Evidence: | [IEP] Inferred from expression pattern [ITCR] Inferred through co-regulation |
|||||||||
| Reference(s): | [1] Merlin C., et al., 2002 | |||||||||
| Promoter | ||||||||||
| Name: | metNp | |||||||||
| +1: | 222714 | |||||||||
| Sigma Factor: | Sigma70 Sigmulon | |||||||||
| Distance from start of the gene: | 69 | |||||||||
| Sequence: |
aaagtgctcttcgcataaacctgattgatttagacgtctggatgccttaacatccatttcAttgacggcgttgcccgtttc -35 -10 +1 |
|||||||||
| Evidence: |
[HIPP] [ICA] [ICWHO] [RS-EPT-CBR] |
|||||||||
| Reference(s): |
[2] Gal J., et al., 2002 [3] Huerta AM., et al., 2003 [4] Salgado H, et al., 2012 |
|||||||||
| Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
|---|---|---|---|---|---|---|---|---|---|---|
| LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
| proximal | MetJ-S-adenosyl-L-methionine | repressor | metNp | 222724 | 222739 | -17.5 | tgatttagacGTCTGGATGCCTTAACatccatttca | nd | [GEA], [AIBSCS] | [2], [5] |
| proximal | MetJ-S-adenosyl-L-methionine | repressor | metNp | 222732 | 222747 | -25.5 | aacctgattgATTTAGACGTCTGGATgccttaacat | nd | [AIBSCS], [APIORCISFBSCS] | [1], [2], [5] |
| Reference(s) |
|
|---|---|
[HIPP] Human inference of promoter position