RegulonDB RegulonDB 11.1: Operon Form
   

ygaC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ygaC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ygaC
Gene(s): ygaC   Genome Browser M3D Gene expression COLOMBOS
Promoter
Name: ygaCp
+1: 2800590
Distance from start of the gene: 596
Sequence: gatactagatgtagttgaaaaaagattcaaccacacaatatatagcaaatagtggtcgaaAttaccctggatatgagcgtg
Evidence: [COMP-AINF-POSITIONAL-IDENTIFICATION]
Reference(s): [1] Vassinova N., et al., 2000
TF binding sites (TFBSs)
[Fur,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal Fur-Fe2+ repressor ygaCp 2800586 2800604 -5.0 aatatatagcAAATAGTGGTCGAAATTACcctggatatg nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [1], [2]


Evidence    

 [COMP-AINF-POSITIONAL-IDENTIFICATION] Automated inference of promoter position

 [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis

 [COMP-AINF-SIMILAR-TO-CONSENSUS] Automated inference based on similarity to consensus sequences


Reference(s)    

 [1] Vassinova N., Kozyrev D., 2000, A method for direct cloning of fur-regulated genes: identification of seven new fur-regulated loci in Escherichia coli., Microbiology 146 Pt 12:3171-3182

 [2] Martin JE., Imlay JA., 2011, The alternative aerobic ribonucleotide reductase of Escherichia coli, NrdEF, is a manganese-dependent enzyme that enables cell replication during periods of iron starvation., Mol Microbiol 80(2):319-34

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