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Name: | phoQ |
Gene(s): | phoQ Genome Browser M3D Gene expression COLOMBOS |
Note(s): | The expression of the gene phoQ is increased under acidic growth conditions in either aerobiosis or microaerobiosis Marzan LW,2013 The increased expression under aerobiosis appears to be caused by the transcription factor PhoB Marzan LW,2013 |
Evidence: | [IC] Inferred by curator |
Promoter | |
Name: | phoQp5 |
+1: | 1189940 |
Sigma Factor: | Sigma24 Sigmulon |
Distance from start of the gene: | 164 |
Sequence: |
ctgaccgcgttcgaatacactattatggaaacgttgatacgcaataatggcaaagtggtcAgcaaagattcgttaatgctc -35 -10 +1 |
Note(s): | Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 4.525. P-value: 3.607e-5 |
Evidence: | [ICWHO] |
Reference(s): | [1] Huerta AM., et al., 2003 |
Name: | phoPQ |
Gene(s): | phoQ, phoP Genome Browser M3D Gene expression COLOMBOS |
Note(s): | The expression of the gene phoP is increased under acidic growth conditions in either aerobiosis or microaerobiosis Marzan LW,2013 |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [ITC] Inferred through co-regulation |
Reference(s): | [3] Kasahara M., et al., 1992 |
Promoter | |
Name: | phoPp1 |
+1: | 1190483 |
Distance from start of the gene: | 36 |
Sequence: |
tttacctcccctccccgctggtttatttaatgtttacccccataaccacataatcgcgttAcactattttaataattaaga |
Evidence: | [TIM] |
Reference(s): |
[4] Eguchi Y., et al., 2004 [5] Kato A., et al., 1999 [6] Minagawa S., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | PhoP-Phosphorylated1 | repressor | phoPp1 | 1190508 | 1190524 | -33.0 | cctccccgctGGTTTATTTAATGTTTAcccccataac | nd | [AIBSCS], [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [4], [5], [6], [7] |
Note(s): | 1This regulatory interaction was identified by means of PhoPQ-related microarray experiments and the investigators checked for the presence of its regulatory motif in the promoter region Monsieurs P,2005.1This regulatory interaction was identified by means of PhoPQ-related microarray experiments and the investigators checked for the presence of its regulatory motif in the promoter region Monsieurs P,2005. |
Name: | phoPQ |
Gene(s): | phoQ, phoP Genome Browser M3D Gene expression COLOMBOS |
Note(s): | The expression of the gene phoP is increased under acidic growth conditions in either aerobiosis or microaerobiosis Marzan LW,2013 |
Evidence: | [ITC] Inferred through co-regulation |
Reference(s): | [3] Kasahara M., et al., 1992 |
Promoter | |
Name: | phoPp3 |
+1: | 1190491 |
Sigma Factor: | Sigma32 Sigmulon |
Distance from start of the gene: | 44 |
Sequence: |
tttttcactttacctcccctccccgctggtttatttaatgtttacccccataaccacataAtcgcgttacactattttaat -35 -10 +1 |
Evidence: |
[AIPP] [CV(TA/TIM)] [IDA] [IEP] [TIM] |
Reference(s): |
[8] Nonaka G., et al., 2006 [9] Wade JT., et al., 2006 |
Name: | phoPQ |
Gene(s): | phoQ, phoP Genome Browser M3D Gene expression COLOMBOS |
Note(s): | The expression of the gene phoP is increased under acidic growth conditions in either aerobiosis or microaerobiosis Marzan LW,2013 phoP expression is also induced under low-Mg2+ conditions and to a greater extent by the antimicrobial peptide C18G, in a PhoP-dependent manner Yadavalli SS,2016 |
Reference(s): | [3] Kasahara M., et al., 1992 |
Promoter | |
Name: | phoPp2 |
+1: | 1190508 |
Distance from start of the gene: | 61 |
Sequence: |
gattatccgctttttattttttcactttacctcccctccccgctggtttatttaatgtttAcccccataaccacataatcg |
Evidence: | [TIM] |
Reference(s): |
[4] Eguchi Y., et al., 2004 [5] Kato A., et al., 1999 [6] Minagawa S., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | PhoP-Phosphorylated1 | activator | phoPp2 | 1190508 | 1190524 | -8.0 | cctccccgctGGTTTATTTAATGTTTAcccccataac | nd | [AIBSCS], [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] | [4], [5], [6], [7] |
Note(s): | 1This regulatory interaction was identified by means of PhoPQ-related microarray experiments and the investigators checked for the presence of its regulatory motif in the promoter region Monsieurs P,2005.1This regulatory interaction was identified by means of PhoPQ-related microarray experiments and the investigators checked for the presence of its regulatory motif in the promoter region Monsieurs P,2005. |
Reference(s) |
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