Name: |
xylFGHR |
Gene(s): |
xylF, xylG, xylH, xylR
Genome Browser
M3D Gene expression
COLOMBOS
|
Evidence: |
[BTEI] Boundaries of transcription experimentally identified [ITCR] Inferred through co-regulation |
Reference(s): |
[1] Song S., et al., 1997 [2] Sumiya M., et al., 1995
|
Promoter |
|
Name: |
xylFp |
+1: |
3731069 |
Distance from start of the gene: |
62
|
Sequence: |
cgtaatcgaaagataaaaatctgtaattgttttcccctgtttagttgctaaaaattggttAcgtttatcgcggtgattgtt
|
Note(s): |
xylF is negatively regulated during entry into stationary phase. The effect by RpoS is likely indirect and might be mediated by an intermediate regulator that itself is directly regulated by RpoS Xu J,1995 |
Evidence: |
[TIM]
|
Reference(s): |
[1] Song S., et al., 1997
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
proximal |
Fis
|
repressor |
xylFp |
3730978
|
3730997
|
-82.0
|
aagtaagatcTCGGTCATAAATCAAGAAATaaaccaaaaa |
nd
|
[GEA], [AIBSCS]
|
[4]
|
proximal |
Fis
|
repressor |
xylFp |
3730985
|
3731004
|
-75.0
|
atctcggtcaTAAATCAAGAAATAAACCAAaaatcgtaat |
nd
|
[GEA], [AIBSCS]
|
[4]
|
proximal |
Fis
|
repressor |
xylFp |
3731081
|
3731100
|
22.0
|
gtttatcgcgGTGATTGTTACTTATTAAAActgtcctcta |
nd
|
[GEA], [AIBSCS]
|
[4], [5]
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
CRP-cyclic-AMP |
activator |
xylFp |
3730878
|
3730900
|
-180.5
|
gataattcacAAGTGTGCGCTCGCTCGCAAAATaaaatggaat
|
[GEA]
|
[1], [3]
|
Fis |
repressor |
xylFp |
3730978
|
3730997
|
-82.0
|
aagtaagatcTCGGTCATAAATCAAGAAATaaaccaaaaa
|
[GEA]
|
[4]
|
Fis |
repressor |
xylFp |
3730985
|
3731004
|
-75.0
|
atctcggtcaTAAATCAAGAAATAAACCAAaaatcgtaat
|
[GEA]
|
[4]
|
XylR-α-D-xylopyranose |
activator |
xylFp |
3730999
|
3731016
|
-61.5
|
tcaagaaataAACCAAAAATCGTAATCGaaagataaaa
|
[GEA]
|
[1]
|
XylR-α-D-xylopyranose |
activator |
xylFp |
3731020
|
3731037
|
-40.5
|
gtaatcgaaaGATAAAAATCTGTAATTGttttcccctg
|
[GEA]
|
[1]
|
Fis |
repressor |
xylFp |
3731081
|
3731100
|
22.0
|
gtttatcgcgGTGATTGTTACTTATTAAAActgtcctcta
|
[GEA]
|
[4], [5]
|