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Name: | zraP | |||||||||
Gene(s): | zraP Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | The transcription of zraP is induced by high concentrations of zinc Ravikumar S, Yoo IK, Lee SY, Hong SH,2011 | |||||||||
Reference(s): | [1] Leonhartsberger S., et al., 2001 | |||||||||
Promoter | ||||||||||
Name: | zraPp | |||||||||
+1: | 4201712 | |||||||||
Sigma Factor: | Sigma54 Sigmulon | |||||||||
Distance from start of the gene: | 24 | |||||||||
Sequence: |
gccagattacccgtcatatcagcgtttcatcgttggcacggaagatgcaatacccgaagtAagacaaccactggaggatta -24 -12 +1 |
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Note(s): | We assigned a putative transcription start site to this promoter based on the observation that the majority of the σ54-dependent promoters, whose transcription start sites were determined experimentally, present a distance of 11 nucleotides between the transcription start site and the -12 box Barrios H,1999. | |||||||||
Evidence: |
[AIBSCS] [AIPP] [HIPP] [ICWHO] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [1] Leonhartsberger S., et al., 2001 [3] Reitzer L., et al., 2001 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | ZraR-phosphorylated | activator | zraPp | 4201782 | 4201798 | -78.0 | cccgcagcagGCGAGTCATTTTTACTCgtttatcatg | nd | [GEA], [APIORCISFBSCS], [BPP] | [1] |
remote | ZraR-phosphorylated | activator | zraPp | 4201811 | 4201827 | -107.0 | aagtttcaatGAGTAAAAATGACTCGCtacccgcagc | nd | [GEA], [BPP] | [1] |
Reference(s) |
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