RegulonDB RegulonDB 11.1: Operon Form

pheU operon and associated TUs in Escherichia coli K-12 genome

Name: pheU
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: pheU
Gene(s): pheU   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified
[EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined
Reference(s): [1] Ow MC., et al., 2002
Name: pheUp
+1: 4362627
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 1
Sequence: aatcgcttttactgaaattaggttgacgagatgtgcagattacggtttaatgcgccccgtTgcccggatagctcagtcggt
                            -35                      -10    +1                   
Evidence: [COMP-AINF]
Reference(s): [2] Huerta AM., et al., 2003
Type: rho-independent
Reference(s): [3] Peters JM., et al., 2009
[4] Zuker M. 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal Fis activator pheUp 4362694 4362708 -74.0 agaagcgattTGCCGCAATCTTAAGcagttgaatc nd [COMP-HINF] nd nd