![]() ![]() ![]() ![]() |
Name: | uxuAB | |||||||||
Gene(s): | uxuA, uxuB Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | uxuAB were found to be downregulated in a MG1655 lysogen carrying the Stx2a phage PA8 1208335|. | |||||||||
Evidence: | [IEP] Inferred from expression pattern [ITCR] Inferred through co-regulation |
|||||||||
Reference(s): | [1] Blanco C., et al., 1986 | |||||||||
Promoter | ||||||||||
Name: | uxuAp | |||||||||
+1: | 4551518 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 118 | |||||||||
Sequence: |
tgtggttaaccaatttcagaattcgggttgacatgtcttaccaaaaggtagaacttatacGccatctcatccgatgcaacg -35 -10 +1 |
|||||||||
Evidence: |
[HIPP] [ICWHO] [TIM] |
|||||||||
Reference(s): |
[2] Huerta AM., et al., 2003 [3] Lynch AS., et al., 1996 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | CRP-cyclic-AMP | activator | uxuAp | 4551365 | 4551386 | -142.5 | ggtcaaccatTGTTGCGATGAATGTCACATCCtctgatcaat | nd | [GEA], [AIBSCS] | [5], [6] |
proximal | CRP-cyclic-AMP | activator | uxuAp | 4551450 | 4551471 | -57.5 | agagtgaaatTCTTGTGATGTGGTTAACCAATttcagaattc | nd | [APIORCISFBSCS], [BPP] | [1] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | ExuR | repressor | uxuAp | 4551350 | 4551367 | -159.5 | tatgttatgtAAATTGGTCAACCATTGTtgcgatgaat | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [4] |
proximal | ExuR | repressor | uxuAp | 4551456 | 4551473 | -53.5 | aaattcttgtGATGTGGTTAACCAATTTcagaattcgg | nd | [GEA], [APIORCISFBSCS] | [4] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | OxyR | repressor | uxuAp | 4551456 | 4551472 | -54.0 | aaattcttgtGATGTGGTTAACCAATTtcagaattcg | nd | [GEA], [APIORCISFBSCS] | [7] |
proximal | OxyR | repressor | uxuAp | 4551478 | 4551494 | -32.0 | caatttcagaATTCGGGTTGACATGTCttaccaaaag | nd | [GEA], [APIORCISFBSCS] | [7] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | UxuR | repressor | uxuAp | 4551350 | 4551367 | -159.5 | tatgttatgtAAATTGGTCAACCATTGTtgcgatgaat | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [5] |
proximal | UxuR | repressor | uxuAp | 4551456 | 4551473 | -53.5 | aaattcttgtGATGTGGTTAACCAATTTcagaattcgg | nd | [GEA], [APIORCISFBSCS] | [4], [8], [9] |
RNA cis-regulatory element | ![]() |
---|
Regulation, transcriptional elongation | |
Attenuator type: | Translational |
Strand: | forward |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
---|---|---|---|---|---|
terminator | -9.7 | 4551595 | 4551628 | ggttccgcgtCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGaaaaatcatg | |
terminator | -9.6 | 4552859 | 4552894 | ggttccttctTCCTTGCCGTCACTCTTTGAAGACGGATTCTGGAGtttacgatga |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
![]() |
---|---|