RegulonDB RegulonDB 10.8: Operon Form
   

caiF operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: caiF
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: caiF
Gene(s): caiF   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Eichler K., et al., 1996
Promoter
Name: caiFp
+1: 34218
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 82
Sequence: gatgacataagcaggatttagctcacacttatcgacggtgaagttgcatactatcgatatAtccacaattttaatatggcc
                      -35                        -10        +1                   
Evidence: [CV(RS-EPT-CBR)]
[CV(TIM)]
[HIPP]
[RS-EPT-CBR]
[TIM]
Reference(s): [1] Eichler K., et al., 1996
[2] Salgado H, et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP activator caiFp 34166 34187 -41.5 ttgatgacatAAGCAGGATTTAGCTCACACTTatcgacggtg nd [BCE], [CV(GEA)], [GEA] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal FNR1 activator caiFp 34156 34169 -55.5 atcgatatttTTGATGACATAAGCaggatttagc nd [BCE], [CV(GEA)], [GEA] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd H-NS repressor caiFp nd nd nd nd nd [GEA] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd NarL-Phosphorylated repressor caiFp nd nd nd nd nd [GEA] [1]
Note(s): 1Four other putative half sites for FNR were detected upstream of this site, but the functionality of these elements is puzzling because of their location with respect to the transcription start site Eichler K,1996.
1Four other putative half sites for FNR were detected upstream of this site, but the functionality of these elements is puzzling because of their location with respect to the transcription start site Eichler K,1996.






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