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Name: | fixABCX |
Gene(s): | fixA, fixB, fixC, fixX Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [LTED] Length of transcript experimentally determined |
Reference(s): | [1] Eichler K., et al., 1995 |
Promoter | |
Name: | fixAp |
+1: | 42325 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 78 |
Sequence: |
tattgaaagttggatttatctgcgtgtgacattttcaatattggtgattaaagttttattTcaaaattaaagggcgtgata -35 -10 +1 |
Evidence: |
[HIPP] [TIM] |
Reference(s): | [2] Eichler K., et al., 1996 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | CRP-cAMP1 | activator | fixAp | 42188 | 42209 | -126.5 | gactttcaatATTGGTGATCCATAAAACAATAttgaaaattt | nd | [APIORCISFBSCS], [CV(GEA)], [GEA] | [2], [5], [6] |
proximal | CRP-cAMP2 | activator | fixAp | 42245 | 42266 | -69.5 | tgttttcaatATTGGTGAGGAACTTAACAATAttgaaagttg | nd | [APIORCISFBSCS], [CV(GEA)], [GEA] | [2], [5], [6] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | CaiF-L-carnitine | activator | fixAp | 42181 | 42196 | -136.5 | aacatctgacTTTCAATATTGGTGATccataaaaca | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [5] |
remote | CaiF-L-carnitine2 | activator | fixAp | 42200 | 42215 | -117.5 | tggtgatccaTAAAACAATATTGAAAatttcttttt | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [5] |
proximal | CaiF-L-carnitine | activator | fixAp | 42238 | 42253 | -79.5 | tacgccgtgtTTTCAATATTGGTGAGgaacttaaca | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [5] |
proximal | CaiF-L-carnitine4 | activator | fixAp | 42257 | 42272 | -60.5 | tggtgaggaaCTTAACAATATTGAAAgttggattta | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [5] |
Note(s): |
1CaiF and CRP bind cooperatively to the cai-fix intergenic region to activate the fixA promoter. 2CaiF and CRP bind cooperatively to the cai-fix intergenic region to activate the fixA promoter.2CaiF and CRP bind cooperatively to the cai-fix intergenic region to activate the fixA promoter. 4CaiF and CRP bind cooperatively to the cai-fix intergenic region to activate the fixA promoter.3CaiF and CRP bind cooperatively to the cai-fix intergenic region to activate the fixA promoter. 4CaiF and CRP bind cooperatively to the cai-fix intergenic region to activate the fixA promoter. 6CaiF and CRP bind cooperatively to the cai-fix intergenic region to activate the fixA promoter. 7CaiF and CRP bind cooperatively to the cai-fix intergenic region to activate the fixA promoter. |
RNA cis-regulatory element | ![]() |
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Regulation, transcriptional elongation | |
Attenuator type: | Translational |
Strand: | forward |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
---|---|---|---|---|---|
terminator | -19.2 | 44134 | 44174 | gttgatccacTCTGGCAGGGCTGCATTTTGGCCCTGCCGCTGACAGGGAGctcttatgtc |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
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