![]() ![]() ![]() ![]() |
Name: | hypF |
Gene(s): | hypF Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [1] Shimada T., et al., 2005 |
Promoter | |
Name: | hypFp2 |
+1: | 2838014 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 589 |
Sequence: |
aatgtattggttgccgtacctgtgaagtagcgtgcgtggtttctcatcaggaaaatcaggActgtgcatcgctgaccccgg -35 -10 +1 |
Evidence: | [IDA] |
Reference(s): | [1] Shimada T., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | Cra | repressor | hypFp2 | 2838090 | 2838107 | -84.5 | ctggagaattTGATGAACCGTTTCATCAttgctgacgc | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1] |
Name: | hypF |
Gene(s): | hypF Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [1] Shimada T., et al., 2005 |
Promoter | |
Name: | hypFp3 |
+1: | 2838105 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 680 |
Sequence: |
taaaaactggcatgatttgtgaatgtatcggcgcattaactgtcattgctggagaatttgAtgaaccgtttcatcattgct -35 -10 +1 |
Evidence: | [IDA] |
Reference(s): | [1] Shimada T., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | Cra | repressor | hypFp3 | 2838090 | 2838107 | 7.5 | ctggagaattTGATGAACCGTTTCATCAttgctgacgc | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [1] |
Name: | hydN-hypF |
Synonym(s): | hydA |
Gene(s): | hypF, hydN Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [LTED] Length of transcript experimentally determined |
Reference(s): | [2] Maier T., et al., 1996 |
Promoter | |
Name: | hydNp |
+1: | 2838132 |
Sigma Factor: | Sigma54 Sigmulon |
Distance from start of the gene: | 27 |
Sequence: |
aattaatttccttaaataacagtaaattaaaaactggcatgatttgtgaatgtatcggcgCattaactgtcattgctggag -24 -12 +1 |
Evidence: |
[HIPP] [TIM] |
Reference(s): | [2] Maier T., et al., 1996 |
Note(s): |
1The regulatory effect of FlhDC in hydN operon transcription has been proved only by a microarray analysis by Pruss BM,2001.1The regulatory effect of FlhDC in hydN operon transcription has been proved only by a microarray analysis by Pruss BM,2001. |
Name: | hypF |
Gene(s): | hypF Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [1] Shimada T., et al., 2005 |
Promoter | |
Name: | hypFp1 |
+1: | Unknown |
Sigma Factor: | Sigma70 Sigmulon |
Evidence: | [IDA] |
Reference(s): | [1] Shimada T., et al., 2005 |
RNA cis-regulatory element | ![]() |
---|
Regulation, transcriptional elongation | |
Attenuator type: | Transcriptional |
Strand: | reverse |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
---|---|---|---|---|---|
terminator | -14.0 | 2838205 | 2838240 | ttgtcatcacATGTCATCGTCACTAGTGTCGATGACATCGTTTTTcctgcattac | |
anti-terminator | -4.6 | 2838231 | 2838260 | ttgctccttcGCGATAAACATTGTCATCACATGTCATCGtcactagtgt | |
anti-anti-terminator | -4.52 | 2838246 | 2838280 | gatccgccgcGACTCACTCATTGCTCCTTCGCGATAAACATTGTcatcacatgt |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
![]() |
---|---|