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Name: | pdxJ-acpS |
Gene(s): | acpS, pdxJ Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [CV(LTED/PM)] cross validation(LTED/PM) [CV(PM)] cross validation(PM) [LTED] Length of transcript experimentally determined [PM] Polar mutation |
Reference(s): | [1] Matsunaga J., et al., 1996 |
Promoter | |
Name: | pdxJp |
+1: | 2701813 |
Distance from start of the gene: | 84 |
Sequence: |
agacacactgcgcgccgcgaaacgctttacccgcatggcgcttaagccgtatcttggcggTaaacctttaaagagcaggga |
Evidence: |
[CV(RS-EPT-CBR)] [CV(TIM)] [RS-EPT-CBR] [TIM] |
Reference(s): |
[1] Matsunaga J., et al., 1996 [2] Salgado H, et al., 2012 |
Name: | rnc-era-recO-pdxJ-acpS |
Gene(s): | acpS, pdxJ, recO, era, rnc Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [CV(LTED/PM)] cross validation(LTED/PM) [CV(PM)] cross validation(PM) [LTED] Length of transcript experimentally determined [PM] Polar mutation |
Reference(s): | [1] Matsunaga J., et al., 1996 |
Promoter | |
Name: | rncp |
+1: | 2704223 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 160 |
Sequence: |
atgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccGaagtttaaggttggcacctc -35 -10 +1 |
Evidence: |
[HIPP] [TIM] |
Reference(s): | [1] Matsunaga J., et al., 1996 |
Name: | rnc-era |
Gene(s): | era, rnc Genome Browser M3D Gene expression COLOMBOS |
Note(s): | The stability of the mRNA containing rnc and era genes is negatively affected by RNAse III Matsunaga J,1996. |
Evidence: | [CV(LTED/PM)] cross validation(LTED/PM) [CV(PM)] cross validation(PM) [LTED] Length of transcript experimentally determined [PM] Polar mutation |
Reference(s): |
[1] Matsunaga J., et al., 1996 [3] Regnier P., et al., 1990 |
Promoter | |
Name: | rncp |
+1: | 2704223 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 160 |
Sequence: |
atgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccGaagtttaaggttggcacctc -35 -10 +1 |
Evidence: |
[HIPP] [TIM] |
Reference(s): | [1] Matsunaga J., et al., 1996 |
Reference(s) |
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