RegulonDB RegulonDB 10.8: Operon Form
   

rnc-era-recO-pdxJ-acpS operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: rnc-era-recO-pdxJ-acpS
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: pdxJ-acpS
Gene(s): acpS, pdxJ   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
[CV(LTED/PM)] cross validation(LTED/PM)
[CV(PM)] cross validation(PM)
[LTED] Length of transcript experimentally determined
[PM] Polar mutation
Reference(s): [1] Matsunaga J., et al., 1996
Promoter
Name: pdxJp
+1: 2701813
Distance from start of the gene: 84
Sequence: agacacactgcgcgccgcgaaacgctttacccgcatggcgcttaagccgtatcttggcggTaaacctttaaagagcaggga
Evidence: [CV(RS-EPT-CBR)]
[CV(TIM)]
[RS-EPT-CBR]
[TIM]
Reference(s): [1] Matsunaga J., et al., 1996
[2] Salgado H, et al., 2012


Transcription unit       
Name: rnc-era-recO-pdxJ-acpS
Gene(s): acpS, pdxJ, recO, era, rnc   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
[CV(LTED/PM)] cross validation(LTED/PM)
[CV(PM)] cross validation(PM)
[LTED] Length of transcript experimentally determined
[PM] Polar mutation
Reference(s): [1] Matsunaga J., et al., 1996
Promoter
Name: rncp
+1: 2704223
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 160
Sequence: atgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccGaagtttaaggttggcacctc
                     -35                       -10          +1                   
Evidence: [HIPP]
[TIM]
Reference(s): [1] Matsunaga J., et al., 1996


Transcription unit       
Name: rnc-era
Gene(s): era, rnc   Genome Browser M3D Gene expression COLOMBOS
Note(s): The stability of the mRNA containing rnc and era genes is negatively affected by RNAse III Matsunaga J,1996.
Evidence: [CV(LTED/PM)] cross validation(LTED/PM)
[CV(PM)] cross validation(PM)
[LTED] Length of transcript experimentally determined
[PM] Polar mutation
Reference(s): [1] Matsunaga J., et al., 1996
[3] Regnier P., et al., 1990
Promoter
Name: rncp
+1: 2704223
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 160
Sequence: atgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccGaagtttaaggttggcacctc
                     -35                       -10          +1                   
Evidence: [HIPP]
[TIM]
Reference(s): [1] Matsunaga J., et al., 1996





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