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| Operon |  |
|---|---|
| Name: | htpG |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | htpG |
| Gene(s): | htpG Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | The htpG gene is upregulated by short-term (30 min) exposure of E. coli to some biocides Merchel Piovesan Pereira B, Wang X, Tagkopoulos I,2020. |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified |
| Reference(s): | [1] Bardwell JC., et al., 1987 |
| Promoter | |
| Name: | htpGp3 |
| +1: | 494817 |
| Sigma Factor: | Sigma54 Sigmulon |
| Distance from start of the gene: | 303 |
| Sequence: |
tcggtccggatgatatcgggcttgatcgtctggaacagcgtctggcagaggaaaaaatcaCtgaagtgatcctcgccacca -24 -12 +1 |
| Note(s): | This promoter was identified by microarray assays with a mutant σ54 strain and a σ54-overexpressing strain, and by σ54-related promoter element identification Zhao K,2010 We assigned a putative transcription start site to this promoter based on the observation that the majority of the σ54-dependent promoters, whose transcription start sites were determined experimentally, present a distance of 11 nucleotides between the transcription start site and the -12 box Barrios H,1999. |
| Evidence: |
[HIPP] [ICWHO] [IEP] [IHBCE] |
| Reference(s): |
[2] Huerta AM., et al., 2003 [3] Zhao K., et al., 2010 |
| Name: | htpG |
| Gene(s): | htpG Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | The htpG gene is upregulated by short-term (30 min) exposure of E. coli to some biocides Merchel Piovesan Pereira B, Wang X, Tagkopoulos I,2020. |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified |
| Reference(s): | [1] Bardwell JC., et al., 1987 |
| Promoter | |
| Name: | htpGp1 |
| +1: | 495075 |
| Sigma Factor: | Sigma32 Sigmulon |
| Distance from start of the gene: | 45 |
| Sequence: |
acgagagcaggatcacctgctctcgcttgaaattattctcccttgtccccatctctcccaCatcctgtttttaaccttaaa -35 -10 +1 |
| Evidence: |
[AIBSCS] [AIPP] [HIPP] [ICWHO] [IDA] [IEP] [TIM] |
| Reference(s): |
[1] Bardwell JC., et al., 1987 [4] Cowing DW., et al., 1985 [2] Huerta AM., et al., 2003 [5] Nonaka G., et al., 2006 [6] Wade JT., et al., 2006 [7] Zhou YN., et al., 1988 |
| Terminator(s) | |
| Type: | rho-independent |
| Sequence: | ttcctgatgtAATGCCGGATGACCTTCGTGTCATCCGGCATTtttcttttca |
| Reference(s): | [1] Bardwell JC., et al., 1987 |
| Name: | htpG |
| Gene(s): | htpG Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | The htpG gene is upregulated by short-term (30 min) exposure of E. coli to some biocides Merchel Piovesan Pereira B, Wang X, Tagkopoulos I,2020. |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified |
| Reference(s): | [1] Bardwell JC., et al., 1987 |
| Promoter | |
| Name: | htpGp2 |
| +1: | 495084 |
| Sigma Factor: | Sigma32 Sigmulon |
| Distance from start of the gene: | 36 |
| Sequence: |
ggatcacctgctctcgcttgaaattattctcccttgtccccatctctcccacatcctgttTttaaccttaaaatggcatta -35 -10 +1 |
| Evidence: |
[AIBSCS] [AIPP] [HIPP] [ICWHO] [IDA] [IEP] [TIM] |
| Reference(s): |
[4] Cowing DW., et al., 1985 [2] Huerta AM., et al., 2003 [5] Nonaka G., et al., 2006 [6] Wade JT., et al., 2006 [7] Zhou YN., et al., 1988 |
| Terminator(s) | |
| Type: | rho-independent |
| Sequence: | ttcctgatgtAATGCCGGATGACCTTCGTGTCATCCGGCATTtttcttttca |
| Reference(s): | [1] Bardwell JC., et al., 1987 |
| Reference(s) |
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|---|---|
[HIPP] Human inference of promoter position