RegulonDB RegulonDB 10.8: Operon Form
   

pncB operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: pncB
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: pncB
Synonym(s): OP00273
Gene(s): pncB   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Otsuka J., et al., 1996
[2] Wubbolts MG., et al., 1990
Promoter
Name: pncBp
+1: 990414
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 58
Sequence: aaaggtggcatatggtgtgatcggggttcaataaattgcgaaacaaggtatactccagcaGttcctgaagatgtttattgt
                           -35                   -10        +1                   
Evidence: [CV(RS-EPT-CBR)]
[CV(TIM)]
[RS-EPT-CBR]
[TIM]
Reference(s): [3] Salgado H, et al., 2012
[2] Wubbolts MG., et al., 1990
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP repressor pncBp 990441 990462 -37.5 aggtggcataTGGTGTGATCGGGGTTCAATAAattgcgaaac nd [AIBSCS], [CV(GEA)], [GEA] [4]
remote CRP-cAMP repressor pncBp 990611 990632 -207.5 ggcttgtggcTGTTGAGTCATAAATAACCTTTagcatctttt nd [AIBSCS], [CV(GEA)], [GEA] [4]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NadR repressor pncBp 990386 990403 20.5 ttcctgaagaTGTTTATTGTACTAAACGctcctgtacg nd [AIBSCS] [1], [5]





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