RegulonDB RegulonDB 10.9: Operon Form
   

rhaT operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: rhaT
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: rhaT
Synonym(s): OP00292
Gene(s): rhaT   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Via P., et al., 1996
Promoter
Name: rhaTp
+1: 4100566
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 41
Sequence: atcgacaacggcggcaacaggcgaaaggttaatcgacagcacgatttttacactcatctcGtcggagatgtgacgcgacga
                            -35                  -10        +1                   
Evidence: [HIPP]
[ICWHO]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[1] Via P., et al., 1996
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote ArcA-Phosphorylated repressor rhaTp 4100715 4100729 -156.0 taaatgatatTGAAAATGATTATCAAtgccgtactt nd [AIBSCS], [GEA] [4]
remote ArcA-Phosphorylated repressor rhaTp 4100732 4100746 -173.0 ggttcattatAGTTAATTAAATGATAttgaaaatga nd [AIBSCS], [GEA] [4]
remote ArcA-Phosphorylated repressor rhaTp 4100743 4100757 -184.0 cgtaagcagtTGGTTCATTATAGTTAattaaatgat nd [AIBSCS], [GEA] [4]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote CRP-cAMP activator rhaTp 4100649 4100671 -93.5 gaaaatgcccGAGATGTGAAGCAAATCACCCACttaatgccgt nd [AIBSCS], [GEA] [1], [5], [6]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal RhaS-L-rhamnose1 activator rhaTp 4100599 4100615 -41.0 atcgacaacgGCGGCAACAGGCGAAAGGttaatcgaca nd [AIBSCS], [APIORCISFBSCS], [BPP], [GEA] [1], [3]
proximal RhaS-L-rhamnose activator rhaTp 4100632 4100648 -74.0 aaatcacccaCTTAATGCCGTGATTGCCagtaaatcga nd [AIBSCS], [APIORCISFBSCS], [BPP], [GEA], [SM] [1], [3]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote RhaS unknown rhaTp 4101057 4101073 -499.0 ccttttttcaGACCTTTCCAGAACAGGCtgtggttagc nd [APIORCISFBSCS], [BPP] [3]
Note(s): 1rhaT is under the RhaR-RhaS cascade for induction by L-rhamnose.
7rhaT is under the RhaR-RhaS cascade for induction by L-rhamnose.





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