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Name: | fadBA | ||||||||||
Synonym(s): | OP00303 | ||||||||||
Gene(s): | fadA, fadB Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [IC-ADJ-GENES-SAME-BIO-PROCESS] Products of adjacent genes in the same biological process | ||||||||||
Reference(s): |
[1] Yang SY. 1991 [2] Yang XY., et al., 1991 |
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Promoter | |||||||||||
Name: | fadBp | ||||||||||
+1: | 4031013 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 42 | ||||||||||
Sequence: |
atcggcatttctttaatcttttgtttgcatatttttaacacaaaatacacacttcgactcAtctggtacgaccagatcacc -35 -10 +1 |
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Evidence: |
[COMP-AINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
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Reference(s): |
[3] Huerta AM., et al., 2003 [2] Yang XY., et al., 1991 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | ArcA-phosphorylated | repressor | fadBp | 4031035 | 4031049 | -29.0 | aatcttttgtTTGCATATTTTTAACacaaaataca | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [4], [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | FadR | repressor | fadBp | 4030997 | 4031013 | 9.0 | acttcgactcATCTGGTACGACCAGATcaccttgcgg | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] | nd | nd |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | Fis | activator | fadBp | 4031031 | 4031050 | -27.0 | taatcttttgTTTGCATATTTTTAACACAAaatacacact | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [6] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
nd | Rob | repressor | fadBp | nd | nd | nd | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [7] |
RNA cis-regulatory element | ![]() |
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Regulation, transcriptional elongation | |
Attenuator type: | Transcriptional |
Strand: | reverse |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
---|---|---|---|---|---|
terminator | -7.6 | 4031048 | 4031089 | gcgtgatttcTGCCGAGCGTGATCAGATCGGCATTTCTTTAATCTTTTGTTtgcatatttt | |
anti-terminator | -9.4 | 4031083 | 4031129 | gaccttaagtCTCCGCATCTTAGCACATCGTTCATCCAGAGCGTGATTTCTGCCGAgcgtgatcag | |
anti-anti-terminator | -4.4 | 4031124 | 4031179 | tttttatagaGCGAGGCCAGTGATTCCATTTTTTACCCTTCTGTTTTTTTGACCTTAAGTCTCCGcatcttagca |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
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