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Name: | glpQ |
Gene(s): | glpQ Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [IEP] Inferred from expression pattern |
Reference(s): | [1] Li Z., et al., 2019 |
Promoter | |
Name: | glpQp |
+1: | 2351124 |
Sigma Factor: | Sigma54 Sigmulon |
Distance from start of the gene: | 113 |
Sequence: |
ggtggcggcgagcgcgattgttggctacaccgtggacttcttcggctgggatggcggcttTatggtaatgattggcggcag -24 -12 +1 |
Evidence: |
[RE] [TIM] |
Reference(s): | [1] Li Z., et al., 2019 |
Name: | glpTQ |
Synonym(s): | OP00304 |
Gene(s): | glpQ, glpT Genome Browser M3D Gene expression COLOMBOS |
Note(s): | GlpR bound to this region represses the glpTQ operon, and this repression depends on the GlpR-binding sites which are close to the glpABC operon, a divergent operon of glpTQ. All these GlpR sites possibly form a looped nucleoprotein complex Yang B,1997 Larson TJ,1992identified five GlpR-binding sites upstream of the glpTQ operon. However , Yang B,1997, using footprinting analysis, concluded that one of them (at -41.5) is not an operator. It was suggested that IHF represses the glpTQ operon by facilitating formation of a repression loop, in which GlpR is also a member of the complex. |
Reference(s): | [2] Larson TJ., et al., 1992 |
Promoter | |
Name: | glpTQp |
+1: | 2352451 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 77 |
Sequence: |
atttaataatgtgtgcggcaattcacatttaatttatgaatgttttcttaacatcgcggcAactcaagaaacggcaggttc -35 -10 +1 |
Note(s): | The activity of this promoter appears to be decreased in the presence of σE. It is repressed during the first 5 minutes following σE induction and decreased from 5 to 10 minutes and from 10 to 20 minutes after induction of the σ factor Lacoux C,2020. |
Evidence: | [HIPP] |
Reference(s): |
[2] Larson TJ., et al., 1992 [3] Yang B., et al., 1997 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cAMP | activator | glpTQp | 2352482 | 2352503 | -41.5 | ttatttaataATGTGTGCGGCAATTCACATTTaatttatgaa | nd | [AIBSCS], [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [2], [3], [6], [9] |
proximal | CRP-cAMP | activator | glpTQp | 2352532 | 2352553 | -91.5 | ttcgaaagtgAAACGTGATTTCATGCGTCATTttgaacattt | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [2], [3], [6] |
remote | CRP-cAMP | activator | glpTQp | 2352572 | 2352593 | -131.5 | aaaacatgaaTTGTTTGATTTCGCGCATATTCgctcataatt | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [2], [3], [6] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | FNR | activator | glpTQp | 2352536 | 2352549 | -91.5 | aaagtgaaacGTGATTTCATGCGTcattttgaac | nd | [AIBSCS], [CV(GEA)], [GEA] | [3], [7], [8] |
remote | FNR | activator | glpTQp | 2352576 | 2352589 | -131.5 | catgaattgtTTGATTTCGCGCATattcgctcat | nd | [APIORCISFBSCS], [CV(GEA)], [GEA] | [3], [7], [8] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | Fis | activator | glpTQp | 2352396 | 2352410 | 49.0 | tcaggctgttAATCATAAATAAGACcacgggccac | nd | [AIBSCS], [CV(GEA)], [GEA] | [5] |
proximal | Fis | activator | glpTQp | 2352460 | 2352474 | -16.0 | tttaatttatGAATGTTTTCTTAACatcgcggcaa | nd | [AIBSCS], [CV(GEA)], [GEA] | [5] |
proximal | Fis | activator | glpTQp | 2352508 | 2352522 | -64.0 | tttgaacattTTGTAAATCTTATTTaataatgtgt | nd | [AIBSCS], [CV(GEA)], [GEA] | [5] |
proximal | Fis | activator | glpTQp | 2352515 | 2352529 | -71.0 | gcgtcattttGAACATTTTGTAAATcttatttaat | nd | [AIBSCS], [CV(GEA)], [GEA] | [5] |
remote | Fis | activator | glpTQp | 2352557 | 2352571 | -113.0 | gcgcatattcGCTCATAATTCGAAAgtgaaacgtg | nd | [AIBSCS], [CV(GEA)], [GEA] | [5] |
remote | Fis | activator | glpTQp | 2352610 | 2352624 | -166.0 | gaagttcgttTTTTACCATTTAGCCatagtaaaaa | nd | [AIBSCS], [CV(GEA)], [GEA] | [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | GlpR | repressor | glpTQp | 2352094 | 2352113 | 348.5 | ttcggtatcgGATCGCTCGAATCCGCGCGTtttcctgccc | nd | [BPP], [CV(SM)], [GEA], [SM] | [3] |
remote | GlpR | repressor | glpTQp | 2352109 | 2352128 | 333.5 | gaaattcatcATGGGTTCGGTATCGGATCGctcgaatccg | nd | [BPP], [CV(SM)], [GEA], [SM] | [3] |
remote | GlpR | repressor | glpTQp | 2352127 | 2352146 | 315.5 | gattgcttatGGATTTTCGAAATTCATCATgggttcggta | nd | [BPP], [CV(SM)], [GEA], [SM] | [3] |
proximal | GlpR | repressor | glpTQp | 2352483 | 2352502 | -41.5 | tatttaataaTGTGTGCGGCAATTCACATTtaatttatga | nd | [APIORCISFBSCS], [BPP], [CV(SM)], [SM] | [2], [4] |
proximal | GlpR | repressor | glpTQp | 2352523 | 2352542 | -81.5 | aacgtgatttCATGCGTCATTTTGAACATTttgtaaatct | nd | [APIORCISFBSCS], [BPP], [CV(SM)], [SM] | [2], [3], [4] |
remote | GlpR | repressor | glpTQp | 2352555 | 2352574 | -113.5 | ttcgcgcataTTCGCTCATAATTCGAAAGTgaaacgtgat | nd | [APIORCISFBSCS], [BPP], [CV(SM)], [SM] | [2], [3], [4] |
remote | GlpR | repressor | glpTQp | 2352574 | 2352593 | -132.5 | aaaacatgaaTTGTTTGATTTCGCGCATATtcgctcataa | nd | [APIORCISFBSCS], [BPP], [CV(SM)], [SM] | [2], [3], [4] |
remote | GlpR | repressor | glpTQp | 2352614 | 2352633 | -172.5 | tatccctctgAAGTTCGTTTTTTACCATTTagccatagta | nd | [APIORCISFBSCS], [BPP], [CV(SM)], [SM] | [2], [3], [4] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | IHF | repressor | glpTQp | 2352244 | 2352256 | 202.0 | ggctatgcggCTTACTATTTGGTtcgtaagaac | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3] |
remote | IHF | repressor | glpTQp | 2352411 | 2352423 | 35.0 | ttctctcactGAATCAGGCTGTTaatcataaat | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3] |
Reference(s) |
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