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Name: | gntT | |||||||||
Synonym(s): | OP00324 | |||||||||
Gene(s): | gntT Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [LTED] Length of transcript experimentally determined | |||||||||
Reference(s): | [1] Porco A., et al., 1997 | |||||||||
Promoter | ||||||||||
Name: | gntTp1 | |||||||||
+1: | 3546405 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 154 | |||||||||
Sequence: |
tttaaatttaccccgctctggtgattctcaaacgccagatgttacccgtatcattcacatGggtaccaaacatactcctga -35 -10 +1 |
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Evidence: |
[ICWHO] [TIM] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [3] Izu H., et al., 1997 [1] Porco A., et al., 1997 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | gntTp1 | 3546323 | 3546344 | -71.5 | ttccccgcgaTAATATGACCAACCTCTCATAAtttaaattta | nd | [GEA], [TASES], [APIORCISFBSCS], [BPP], [SM], [TASES] | [3], [4], [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | GntR | repressor | gntTp1 | 3546381 | 3546400 | -14.5 | ctcaaacgccAGATGTTACCCGTATCATTCacatgggtac | nd | [GEA], [TASES], [AIBSCS], [APIORCISFBSCS], [BPP], [TASES] | [3], [4], [5] |
remote | GntR | repressor | gntTp1 | 3546522 | 3546541 | 127.5 | gtcagaaaatTGACGTTACCCATAACAAATgaaaggccag | nd | [GEA], [TASES], [AIBSCS], [APIORCISFBSCS], [BPP], [TASES] | [4], [5] |
Name: | gntT | |||||||||
Gene(s): | gntT Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [LTED] Length of transcript experimentally determined | |||||||||
Reference(s): | [1] Porco A., et al., 1997 | |||||||||
Promoter | ||||||||||
Name: | gntTp2 | |||||||||
+1: | 3546446 | |||||||||
Distance from start of the gene: | 113 | |||||||||
Sequence: |
ttacccgtatcattcacatgggtaccaaacatactcctgacatctgactacaataattagTtttagtgggtatcagtcgtg |
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Evidence: | [TIM] | |||||||||
Reference(s): | [3] Izu H., et al., 1997 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | CRP-cyclic-AMP | activator | gntTp2 | 3546323 | 3546344 | -112.5 | ttccccgcgaTAATATGACCAACCTCTCATAAtttaaattta | nd | [GEA], [TASES], [APIORCISFBSCS], [BPP], [SM], [TASES] | [3], [4], [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | GntR | repressor | gntTp2 | 3546381 | 3546400 | -55.5 | ctcaaacgccAGATGTTACCCGTATCATTCacatgggtac | nd | [GEA], [TASES], [AIBSCS], [APIORCISFBSCS], [BPP], [TASES] | [3], [4], [5] |
remote | GntR | repressor | gntTp2 | 3546522 | 3546541 | 86.5 | gtcagaaaatTGACGTTACCCATAACAAATgaaaggccag | nd | [GEA], [TASES], [AIBSCS], [APIORCISFBSCS], [BPP], [TASES] | [4], [5] |
Name: | gntT | |||||||||
Gene(s): | gntT Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [LTED] Length of transcript experimentally determined | |||||||||
Reference(s): | [1] Porco A., et al., 1997 | |||||||||
Promoter | ||||||||||
Name: | gntTp3 | |||||||||
+1: | 3546449 | |||||||||
Distance from start of the gene: | 110 | |||||||||
Sequence: |
cccgtatcattcacatgggtaccaaacatactcctgacatctgactacaataattagtttTagtgggtatcagtcgtggtg |
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Evidence: | [TIM] | |||||||||
Reference(s): | [3] Izu H., et al., 1997 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | CRP-cyclic-AMP | activator | gntTp3 | 3546323 | 3546344 | -115.5 | ttccccgcgaTAATATGACCAACCTCTCATAAtttaaattta | nd | [GEA], [TASES], [APIORCISFBSCS], [BPP], [SM], [TASES] | [3], [4], [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | GntR | repressor | gntTp3 | 3546381 | 3546400 | -58.5 | ctcaaacgccAGATGTTACCCGTATCATTCacatgggtac | nd | [GEA], [TASES], [AIBSCS], [APIORCISFBSCS], [BPP], [TASES] | [3], [4], [5] |
remote | GntR | repressor | gntTp3 | 3546522 | 3546541 | 83.5 | gtcagaaaatTGACGTTACCCATAACAAATgaaaggccag | nd | [GEA], [TASES], [AIBSCS], [APIORCISFBSCS], [BPP], [TASES] | [4], [5] |
Reference(s) |
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