RegulonDB RegulonDB 10.7: Operon Form
   

gntT operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: gntT
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: gntT
Synonym(s): OP00324
Gene(s): gntT   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
[LTED] Length of transcript experimentally determined
Reference(s): [1] Porco A., et al., 1997
Promoter
Name: gntTp1
+1: 3546405
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 154
Sequence: tttaaatttaccccgctctggtgattctcaaacgccagatgttacccgtatcattcacatGggtaccaaacatactcctga
                         -35                     -10        +1                   
Evidence: [TIM] ; Method: Primer Extension
[TIM]
Reference(s): [2] Izu H., et al., 1997
[1] Porco A., et al., 1997
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP activator gntTp1 3546323 3546344 -71.5 ttccccgcgaTAATATGACCAACCTCTCATAAtttaaattta nd [APIORCISFBSCS], [BPP], [GEA], [SM], [TASES] [2], [3], [4], [5]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal GntR repressor gntTp1 3546381 3546400 -14.5 ctcaaacgccAGATGTTACCCGTATCATTCacatgggtac nd [AIBSCS], [APIORCISFBSCS], [BPP], [GEA], [TASES] [2], [3], [4], [5], [6]
remote GntR repressor gntTp1 3546522 3546541 127.5 gtcagaaaatTGACGTTACCCATAACAAATgaaaggccag nd [AIBSCS], [APIORCISFBSCS], [BPP], [GEA], [TASES] [3], [4], [5], [6]


Transcription unit          
Name: gntT
Gene(s): gntT   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
[LTED] Length of transcript experimentally determined
Reference(s): [1] Porco A., et al., 1997
Promoter
Name: gntTp2
+1: 3546446
Distance from start of the gene: 113
Sequence: ttacccgtatcattcacatgggtaccaaacatactcctgacatctgactacaataattagTtttagtgggtatcagtcgtg
Evidence: [TIM]
Reference(s): [2] Izu H., et al., 1997
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote CRP-cAMP activator gntTp2 3546323 3546344 -112.5 ttccccgcgaTAATATGACCAACCTCTCATAAtttaaattta nd [APIORCISFBSCS], [BPP], [GEA], [SM], [TASES] [2], [3], [4], [5]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal GntR repressor gntTp2 3546381 3546400 -55.5 ctcaaacgccAGATGTTACCCGTATCATTCacatgggtac nd [AIBSCS], [APIORCISFBSCS], [BPP], [GEA], [TASES] [2], [3], [4], [5], [6]
remote GntR repressor gntTp2 3546522 3546541 86.5 gtcagaaaatTGACGTTACCCATAACAAATgaaaggccag nd [AIBSCS], [APIORCISFBSCS], [BPP], [GEA], [TASES] [3], [4], [5], [6]


Transcription unit          
Name: gntT
Gene(s): gntT   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
[LTED] Length of transcript experimentally determined
Reference(s): [1] Porco A., et al., 1997
Promoter
Name: gntTp3
+1: 3546449
Distance from start of the gene: 110
Sequence: cccgtatcattcacatgggtaccaaacatactcctgacatctgactacaataattagtttTagtgggtatcagtcgtggtg
Evidence: [TIM]
Reference(s): [2] Izu H., et al., 1997
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote CRP-cAMP activator gntTp3 3546323 3546344 -115.5 ttccccgcgaTAATATGACCAACCTCTCATAAtttaaattta nd [APIORCISFBSCS], [BPP], [GEA], [SM], [TASES] [2], [3], [4], [5]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal GntR repressor gntTp3 3546381 3546400 -58.5 ctcaaacgccAGATGTTACCCGTATCATTCacatgggtac nd [AIBSCS], [APIORCISFBSCS], [BPP], [GEA], [TASES] [2], [3], [4], [5], [6]
remote GntR repressor gntTp3 3546522 3546541 83.5 gtcagaaaatTGACGTTACCCATAACAAATgaaaggccag nd [AIBSCS], [APIORCISFBSCS], [BPP], [GEA], [TASES] [3], [4], [5], [6]





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