RegulonDB RegulonDB 10.10: Operon Form
   

accA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: accA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: accA
Gene(s): accA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Li SJ., et al., 1993
Promoter
Name: accAp2
+1: 208326
Distance from start of the gene: 295
Sequence: acttatcgtcagcggacaggtcagctttgatgacttcagcggtgggcttaaaatgaccgcTcgcgaagtgatggatattga
Evidence: [RS-EPT-CBR]
[TIM]
Reference(s): [2] My L., et al., 2015
[3] Salgado H, et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal FadR activator accAp2 208280 208296 -38.0 atcgtcagcgGACAGGTCAGCTTTGATgacttcagcg nd [GEA], [AIBSCS], [BPP] [2]


Transcription unit       
Name: accA
Gene(s): accA   Genome Browser M3D Gene expression COLOMBOS
Note(s): The accA gene is located at min 4.3 in a complex gene cluster. The messages observed may not be primary transcription products (the presence of 5'-triphosphates was not demonstrated); however, each of the 5' ends lies downstream of a reasonable -10 promoter element, strongly suggesting that nucleotide processing of the 5' ends occurrs.
The accAp promoter identified by 5'-RACE by My et al. My L,2015is 1 bp upstream from a promoter identified previously Li SJ,1993
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Li SJ., et al., 1993
Promoter
Name: accAp1
+1: 208411
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 210
Sequence: gcccgggaaaaatatgctcgcgggcttgctatctcgctgacggacaggcaaattgatgacCagcttttaaaccgactccgt
                          -35                    -10        +1                   
Evidence: [ICWHO]
[TIM]
Reference(s): [4] Huerta AM., et al., 2003
[1] Li SJ., et al., 1993
[2] My L., et al., 2015





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