|
|
| Operon |  |
|---|---|
| Name: | btuCED |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | btuD |
| Gene(s): | btuD Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [IEP] Inferred from expression pattern |
| Reference(s): | [1] Li Z., et al., 2019 |
| Promoter | |
| Name: | btuDp |
| +1: | 1793583 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 25 |
| Sequence: |
gaaaagtcatccagcgtttttccccggatatgacgccggaagatcccattgtgatggaaaGcattaaactggcgttggcaa -35 -10 +1 |
| Evidence: |
[ICWHO] [RSE] [TIM] |
| Reference(s): | [1] Li Z., et al., 2019 |
| Name: | btuE |
| Gene(s): | btuE Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [IEP] Inferred from expression pattern |
| Reference(s): | [1] Li Z., et al., 2019 |
| Promoter | |
| Name: | btuEp1 |
| +1: | 1794124 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 15 |
| Sequence: |
agcaggacgttagccgcaaaaagacggtctatgattaaaagctaagatttttactgaccaCacccaggagaaacgatgcaa -35 -10 +1 |
| Evidence: |
[ICWHO] [RSE] [TIM] |
| Reference(s): | [1] Li Z., et al., 2019 |
| Name: | btuE |
| Gene(s): | btuE Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [IEP] Inferred from expression pattern |
| Reference(s): | [1] Li Z., et al., 2019 |
| Promoter | |
| Name: | btuEp2 |
| +1: | 1794129 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 20 |
| Sequence: |
ttaaaagcaggacgttagccgcaaaaagacggtctatgattaaaagctaagatttttactGaccacacccaggagaaacga -35 -10 +1 |
| Evidence: |
[ICWHO] [RSE] [TIM] |
| Reference(s): | [1] Li Z., et al., 2019 |
| Name: | btuCED |
| Gene(s): | btuD, btuE, btuC Genome Browser M3D Gene expression COLOMBOS |
| Reference(s): | [2] Rioux CR., et al., 1989 |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Transcriptional |
| Strand: | reverse |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -15.3 | 1795210 | 1795240 | tgatctaactAAAAAGGCCGCTCTGCGGCCTTTTTTCTTTtcactgtcga |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
| Reference(s) |
|
|---|---|
[ICWHO] Inferred computationally without human oversight