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Name: | caiTABCDE |
Gene(s): | caiE, caiD, caiC, caiB, caiA, caiT Genome Browser M3D Gene expression COLOMBOS |
Note(s): | The transcript of caiE is increased after σE induction, as observed in high-throughput analysis of gene expression Lacoux C,2020. |
Evidence: | [PAGTSBP] Products of adjacent genes in the same biological process |
Reference(s): |
[1] Eichler K., et al., 1994 [2] Eichler K., et al., 1996 |
Promoter | |
Name: | caiTp |
+1: | 42037 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 106 |
Sequence: |
cgaaacaaaaatgtgataccaatcacagaatacagcttattgaatacccattatgagttaGccattaacgcgtccacgagg -35 -10 +1 |
Evidence: | [TIM] |
Reference(s): | [3] Buchet A., et al., 1998 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | ArcA-Phosphorylated | activator | caiTp | 41981 | 41995 | 50.0 | tatattaaatGTTAACAAAAATAAAacaaacggga | nd | [AIBSCS], [CV(GEA)], [GEA] | [5] |
proximal | ArcA-Phosphorylated | activator | caiTp | 42003 | 42017 | 28.0 | cgtccacgagGTTAATAATAATTATattaaatgtt | nd | [AIBSCS], [CV(GEA)], [GEA] | [5] |
proximal | ArcA-Phosphorylated | activator | caiTp | 42121 | 42135 | -91.0 | caaactgattATTAATCAAAATTAAcgaaaaaacg | nd | [AIBSCS], [CV(GEA)], [GEA] | [5] |
remote | ArcA-Phosphorylated | activator | caiTp | 42131 | 42145 | -101.0 | cagagcataaCAAACTGATTATTAAtcaaaattaa | nd | [AIBSCS], [CV(GEA)], [GEA] | [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cAMP | activator | caiTp | 42068 | 42090 | -41.5 | acccgaaacaAAAATGTGATACCAATCACAGAAtacagcttat | nd | [AIBSCS], [APIORCISFBSCS], [BCE], [CV(GEA)], [GEA] | [1], [3], [4], [8] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | CaiF-L-carnitine | activator | caiTp | 42181 | 42196 | -151.5 | tgttttatggATCACCAATATTGAAAgtcagatgtt | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] |
remote | CaiF-L-carnitine | activator | caiTp | 42200 | 42215 | -170.5 | aaaaagaaatTTTCAATATTGTTTTAtggatcacca | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] |
remote | CaiF-L-carnitine | activator | caiTp | 42238 | 42253 | -208.5 | tgttaagttcCTCACCAATATTGAAAacacggcgta | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] |
remote | CaiF-L-carnitine | activator | caiTp | 42257 | 42272 | -227.5 | taaatccaacTTTCAATATTGTTAAGttcctcacca | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | FNR1 | activator | caiTp | 42072 | 42085 | -41.5 | aaacaaaaatGTGATACCAATCACagaatacagc | nd | [AIBSCS], [CV(GEA)], [GEA] | [6], [7] |
proximal | FNR | activator | caiTp | 42121 | 42134 | -90.5 | aaactgattaTTAATCAAAATTAAcgaaaaaacg | nd | [AIBSCS], [CV(GEA)], [GEA] | [6], [7] |
Note(s): |
1By making use of microarray analyses, it was concluded that FNR activates cai operon expression under anaerobiosis Salmon K,2003. Constantinidou C,2006. 9By making use of microarray analyses, it was concluded that FNR activates cai operon expression under anaerobiosis Salmon K,2003. Constantinidou C,2006. |
Name: | caiCDE |
Gene(s): | caiE, caiD, caiC Genome Browser M3D Gene expression COLOMBOS |
Note(s): | The transcript of caiE is increased after σE induction, as observed in high-throughput analysis of gene expression Lacoux C,2020. |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [PAGTSBP] Products of adjacent genes in the same biological process |
Reference(s): | [9] Zaslaver A., et al., 2006 |
Promoter | |
Name: | caiCp |
+1: | Unknown |
Note(s): | Zaslaver et al. demonstrated in 2006, by means of a library of fluorescent transcription fusions, that this promoter can be transcribed in vitro Zaslaver A,2006. Based on this, a putative promoter was suggested, but the +1 site of the transcription initiation has not been determined, although there exists promoter activity. |
Evidence: | [IEP] |
Reference(s): | [9] Zaslaver A., et al., 2006 |
Reference(s) |
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