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Name: | fliDST |
Gene(s): | fliD, fliS, fliT Genome Browser M3D Gene expression COLOMBOS |
Note(s): | In a study where it was shown that the L-tryptophan eradicated persister cells, it was observed that the exogenous amino acid downregulated the expression of fliDS as well as other flagellar genes 31271063. |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): |
[1] Kawagishi I., et al., 1992 [2] Stafford GP., et al., 2005 [3] Yokoseki T., et al., 1995 |
Promoter | |
Name: | fliDp |
+1: | 2003817 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 55 |
Sequence: |
ttttctctgccccttattcccgctattaaaaaaaacaattaaacgtaaactttgcgcaatTcagaccgataaccccggtat -35 -10 +1 |
Note(s): | We assigned a putative transcriptional start site to this promoter based on the observation that the majority of the promoters, whose transcriptional start sites were determined experimentally, present a distance of 6 nucleotides between the transcriptional start site and the -10 box. |
Evidence: | [HIPP] |
Reference(s): |
[1] Kawagishi I., et al., 1992 [2] Stafford GP., et al., 2005 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | cgaataatccGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCGAAGAATGCGTAATCccacgctgtt |
Reference(s): | [1] Kawagishi I., et al., 1992 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | FlhDC | activator | fliDp | 2003740 | 2003756 | -69.0 | cattttttgtTAGTCGCCGAAATACTCttttctctgc | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [2], [4] |
proximal | FlhDC | activator | fliDp | 2003768 | 2003784 | -41.0 | tttctctgccCCTTATTCCCGCTATTAaaaaaaacaa | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [2], [4] |
Name: | fliDST |
Gene(s): | fliD, fliS, fliT Genome Browser M3D Gene expression COLOMBOS |
Note(s): | In a study where it was shown that the L-tryptophan eradicated persister cells, it was observed that the exogenous amino acid downregulated the expression of fliDS as well as other flagellar genes 31271063. |
Promoter | |
Name: | fliDp1 |
+1: | Unknown |
Sigma Factor: | Sigma28 Sigmulon |
Note(s): | The sequence of this promoter has been defined, by computational analyses, from the consensus sequence of the σ28 (σF) promoters TAAAGTTT in the -35 box and GCCGATAA in the -10 box Park K,2001. Helmann JD,1987. Ide N,1999. Ko M,2000 Kundu et al. (1997) showed that the transcription of fliD is highly dependent on alternative factor σF and can be transcribed by RNA polymerase σ28 in vitro Kundu TK,1997 |
Evidence: |
[HIPP] [RPF] |
Reference(s): |
[5] Chilcott GS., et al., 2000 [6] Helmann JD., et al., 1987 [7] Ide N., et al., 1999 [8] Ko M., et al., 2000 [9] Kundu TK., et al., 1997 [10] Park K., et al., 2001 |
Reference(s) |
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