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Name: | narGHJI |
Synonym(s): | OP00060, chlC, narG, narGHIJ |
Gene(s): | narG, narH, narJ, narI Genome Browser M3D Gene expression COLOMBOS |
Note(s): | IHF alters the DNA topology of the narGHJI promoter upstream region and at the same time acts as a transcriptional enhancer of NarL and FNR from the narG promoter upon nitrate availability and under anaerobic conditions, respectively Schroder I,1993 The NarX-NarL complex is necessary for colonization and competitive fitness in the streptomycin-treated mouse intestine through narG activation 21825069 A narG mutant responded poorly to nitrite, consistent with nitrite reduction by NarGHI being the major source of NO in the cytoplasm Vine CE,2011. |
Reference(s): |
[1] Bonnefoy V., et al., 1997 [2] Darwin AJ., et al., 1996 [3] Li J., et al., 1994 |
Promoter | |
Name: | narGp |
+1: | 1279807 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 57 |
Sequence: |
tccccatcactcttgatcgttatcaattcccacgctgtttcagagcgttaccttgcccttAaacattagcaatgtcgattt -35 -10 +1 |
Evidence: |
[HIPP] [TIM] |
Reference(s): |
[4] Rabin RS., et al., 1992 [5] Walker MS., et al., 1991 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | gctcgtcactAAGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGgtgcggggtg |
Reference(s): |
[6] Feng CQ., et al., 2019 [7] Lesnik EA., et al., 2001 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | FNR | activator | narGp | 1279759 | 1279772 | -41.5 | cccatcactcTTGATCGTTATCAAttcccacgct | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [16], [17], [18], [19] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | Fis | repressor | narGp | 1279697 | 1279711 | -103.0 | gttatgtggtGGCTGTTAATTATCCtaaaggggta | nd | [AIBSCS], [CV(GEA)], [GEA] | [13] |
proximal | Fis | repressor | narGp | 1279734 | 1279748 | -66.0 | ttaggaatttACTTTATTTTTCATCcccatcactc | nd | [AIBSCS], [CV(GEA)], [GEA] | [13] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | IHF | activator | narGp | 1279676 | 1279688 | -125.0 | aaacgtcttaATTTACAGTCTGTtatgtggtgg | nd | [APIORCISFBSCS], [BCE], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [4], [11], [12] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | NarL-Phosphorylated | activator | narGp | 1279591 | 1279606 | -208.0 | gagccattaaTATGTTACCCATGGGGaatactcctt | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3], [4], [10] |
remote | NarL-Phosphorylated | activator | narGp | 1279604 | 1279619 | -195.0 | gttacccatgGGGAATACTCCTTAATacccatctgc | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [2], [3], [4], [10] |
remote | NarL-Phosphorylated | activator | narGp | 1279614 | 1279629 | -185.0 | gggaatactcCTTAATACCCATCTGCataaaaatct | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [2], [3], [4], [10] |
remote | NarL-Phosphorylated | activator | narGp | 1279698 | 1279713 | -101.0 | ttatgtggtgGCTGTTAATTATCCTAaaggggtatc | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [2], [3], [4], [10], [14], [15] |
proximal | NarL-Phosphorylated | activator | narGp | 1279710 | 1279725 | -89.0 | tgttaattatCCTAAAGGGGTATCTTaggaatttac | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [2], [3], [4], [10] |
proximal | NarL-Phosphorylated | activator | narGp | 1279720 | 1279735 | -79.0 | cctaaaggggTATCTTAGGAATTTACtttatttttc | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3], [4], [10] |
proximal | NarL-Phosphorylated | activator | narGp | 1279728 | 1279743 | -71.0 | ggtatcttagGAATTTACTTTATTTTtcatccccat | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3], [4], [10] |
proximal | NarL-Phosphorylated | activator | narGp | 1279742 | 1279757 | -57.0 | ttactttattTTTCATCCCCATCACTcttgatcgtt | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [GEA] | [3], [4], [10] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | RstA-Phosphorylated | activator | narGp | 1279523 | 1279539 | -276.0 | ctttttttatGCGTCATTTAGTTACAAcatactaatg | nd | [APIORCISFBSCS] | [8], [9] |
Reference(s) |
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