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Name: | ssb | |||||||||
Synonym(s): | OP00091 | |||||||||
Gene(s): | ssb Genome Browser M3D Gene expression COLOMBOS | |||||||||
Reference(s): | [1] Schaefer TS., et al., 1991 | |||||||||
Promoter | ||||||||||
Name: | ssbp3 | |||||||||
+1: | 4274011 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 114 | |||||||||
Sequence: |
attgacctgaatgaatatacagtattggaatgcattacccggagtgttgtgtaacaatgtCtggccaggtttgtttcccgg -35 -10 +1 |
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Evidence: |
[ICWHO] [IHBCE] [TIM] |
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Reference(s): |
[2] Brandsma JA., et al., 1985 [3] Huerta AM., et al., 2003 [4] Ogasawara H., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | ArcA-phosphorylated | repressor | ssbp3 | 4273931 | 4273945 | -72.5 | ggcgatcacaAACGGTTAATTATGAcacaaattga | nd | [GEA], [APIORCISFBSCS], [BPP] | [4] |
proximal | ArcA-phosphorylated | repressor | ssbp3 | 4273994 | 4274008 | -9.5 | attacccggaGTGTTGTGTAACAATgtctggccag | nd | [GEA], [APIORCISFBSCS], [BPP] | [4] |
remote | ArcA-phosphorylated | repressor | ssbp3 | 4274034 | 4274048 | 31.5 | tttcccggaaCCGAGGTCACAACATagtaaaagcg | nd | [GEA], [APIORCISFBSCS], [BPP] | [4] |
remote | ArcA-phosphorylated | repressor | ssbp3 | 4274077 | 4274091 | 74.5 | aatggtacaaTCGCGCGTTTACACTtattcagaac | nd | [GEA], [APIORCISFBSCS], [BPP] | [4] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | LexA | repressor | ssbp3 | 4273955 | 4273974 | -46.5 | acacaaattgACCTGAATGAATATACAGTAttggaatgca | nd | [APIORCISFBSCS], [BCE] | nd |
Name: | ssb | |||||||||
Gene(s): | ssb Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [BTEI] Boundaries of transcription experimentally identified | |||||||||
Reference(s): | [2] Brandsma JA., et al., 1985 | |||||||||
Promoter | ||||||||||
Name: | ssbp2 | |||||||||
+1: | 4274080 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 45 | |||||||||
Sequence: |
tttgtttcccggaaccgaggtcacaacatagtaaaagcgctattggtaatggtacaatcgCgcgtttacacttattcagaa -35 -10 +1 |
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Evidence: |
[ICWHO] [IHBCE] [TIM] |
|||||||||
Reference(s): |
[2] Brandsma JA., et al., 1985 [3] Huerta AM., et al., 2003 [4] Ogasawara H., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | ArcA-phosphorylated | repressor | ssbp2 | 4273931 | 4273945 | -141.5 | ggcgatcacaAACGGTTAATTATGAcacaaattga | nd | [GEA], [APIORCISFBSCS], [BPP] | [4] |
proximal | ArcA-phosphorylated | repressor | ssbp2 | 4273994 | 4274008 | -78.5 | attacccggaGTGTTGTGTAACAATgtctggccag | nd | [GEA], [APIORCISFBSCS], [BPP] | [4] |
proximal | ArcA-phosphorylated | repressor | ssbp2 | 4274034 | 4274048 | -38.5 | tttcccggaaCCGAGGTCACAACATagtaaaagcg | nd | [GEA], [APIORCISFBSCS], [BPP] | [4] |
proximal | ArcA-phosphorylated | repressor | ssbp2 | 4274077 | 4274091 | 5.5 | aatggtacaaTCGCGCGTTTACACTtattcagaac | nd | [GEA], [APIORCISFBSCS], [BPP] | [4] |
Name: | ssb | |||||||||
Gene(s): | ssb Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [BTEI] Boundaries of transcription experimentally identified | |||||||||
Reference(s): | [2] Brandsma JA., et al., 1985 | |||||||||
Promoter | ||||||||||
Name: | ssbp1 | |||||||||
+1: | 4274092 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 33 | |||||||||
Sequence: |
aaccgaggtcacaacatagtaaaagcgctattggtaatggtacaatcgcgcgtttacactTattcagaacgatttttttca -35 -10 +1 |
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Evidence: |
[ICWHO] [IHBCE] [TIM] |
|||||||||
Reference(s): |
[2] Brandsma JA., et al., 1985 [3] Huerta AM., et al., 2003 [4] Ogasawara H., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | ArcA-phosphorylated | repressor | ssbp1 | 4273931 | 4273945 | -153.5 | ggcgatcacaAACGGTTAATTATGAcacaaattga | nd | [GEA], [APIORCISFBSCS], [BPP] | [4] |
proximal | ArcA-phosphorylated | repressor | ssbp1 | 4273994 | 4274008 | -90.5 | attacccggaGTGTTGTGTAACAATgtctggccag | nd | [GEA], [APIORCISFBSCS], [BPP] | [4] |
proximal | ArcA-phosphorylated | repressor | ssbp1 | 4274034 | 4274048 | -50.5 | tttcccggaaCCGAGGTCACAACATagtaaaagcg | nd | [GEA], [APIORCISFBSCS], [BPP] | [4] |
proximal | ArcA-phosphorylated | repressor | ssbp1 | 4274077 | 4274091 | -7.5 | aatggtacaaTCGCGCGTTTACACTtattcagaac | nd | [GEA], [APIORCISFBSCS], [BPP] | [4] |
Reference(s) |
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