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Name: | ssb | ||||||||||
Gene(s): | ssb Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified | ||||||||||
Reference(s): | [2] Brandsma JA., et al., 1985 | ||||||||||
Promoter | |||||||||||
Name: | ssbp2 | ||||||||||
+1: | 4274080 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 45 | ||||||||||
Sequence: |
tttgtttcccggaaccgaggtcacaacatagtaaaagcgctattggtaatggtacaatcgCgcgtttacacttattcagaa -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
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Reference(s): |
[2] Brandsma JA., et al., 1985 [3] Huerta AM., et al., 2003 [4] Ogasawara H., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | ArcA-phosphorylated | repressor | ssbp2 | 4273931 | 4273945 | -141.5 | ggcgatcacaAACGGTTAATTATGAcacaaattga | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [4] |
proximal | ArcA-phosphorylated | repressor | ssbp2 | 4273994 | 4274008 | -78.5 | attacccggaGTGTTGTGTAACAATgtctggccag | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [4] |
proximal | ArcA-phosphorylated | repressor | ssbp2 | 4274034 | 4274048 | -38.5 | tttcccggaaCCGAGGTCACAACATagtaaaagcg | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [4] |
proximal | ArcA-phosphorylated | repressor | ssbp2 | 4274077 | 4274091 | 5.5 | aatggtacaaTCGCGCGTTTACACTtattcagaac | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [4] |
Name: | ssb | ||||||||||
Gene(s): | ssb Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified | ||||||||||
Reference(s): | [2] Brandsma JA., et al., 1985 | ||||||||||
Promoter | |||||||||||
Name: | ssbp1 | ||||||||||
+1: | 4274092 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 33 | ||||||||||
Sequence: |
aaccgaggtcacaacatagtaaaagcgctattggtaatggtacaatcgcgcgtttacactTattcagaacgatttttttca -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
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Reference(s): |
[2] Brandsma JA., et al., 1985 [3] Huerta AM., et al., 2003 [4] Ogasawara H., et al., 2005 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | ArcA-phosphorylated | repressor | ssbp1 | 4273931 | 4273945 | -153.5 | ggcgatcacaAACGGTTAATTATGAcacaaattga | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [4] |
proximal | ArcA-phosphorylated | repressor | ssbp1 | 4273994 | 4274008 | -90.5 | attacccggaGTGTTGTGTAACAATgtctggccag | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [4] |
proximal | ArcA-phosphorylated | repressor | ssbp1 | 4274034 | 4274048 | -50.5 | tttcccggaaCCGAGGTCACAACATagtaaaagcg | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [4] |
proximal | ArcA-phosphorylated | repressor | ssbp1 | 4274077 | 4274091 | -7.5 | aatggtacaaTCGCGCGTTTACACTtattcagaac | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [4] |
Evidence |
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Reference(s) |
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