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Name: | araFGH |
Gene(s): | araH, araG, araF Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ITC] Inferred through co-regulation |
Reference(s): | [1] Maciag A., et al., 2011 |
Promoter | |
Name: | araFp2 |
+1: | 1986148 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 20 |
Sequence: |
aatgctttgttttccgattaatttaacgaatgtcattcgtttttgccctacacaaaacgaCactaaagctggagagaacca -10 +1 |
Evidence: | [HTIM] |
Reference(s): | [1] Maciag A., et al., 2011 |
Name: | araFGH |
Synonym(s): | OP00138, araFG-w1867-araH |
Gene(s): | araH, araG, araF Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ITC] Inferred through co-regulation |
Reference(s): |
[1] Maciag A., et al., 2011 [2] Scripture JB., et al., 1987 |
Promoter | |
Name: | araFp |
+1: | 1986238 |
Sigma Factor: | Sigma70, Sigma38 |
Distance from start of the gene: | 110 |
Sequence: |
aattctgcgatgtgatattgctctcctatggagaattaatttctcgctaaaactatgtcaAcacagtcacttatcttttag -35 -10 +1 |
Evidence: | [TIM] |
Reference(s): |
[3] Hendrickson W., et al., 1990 [1] Maciag A., et al., 2011 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | AraC-arabinose | activator | araFp | 1986300 | 1986316 | -70.0 | ccgctaaattTATGCACGTTCTCACTGtaattctgcg | nd | [APIORCISFBSCS], [BPP] | [3], [5], [6], [7] |
proximal | AraC-arabinose | activator | araFp | 1986321 | 1986337 | -91.0 | ggctttccctTATGTCTTTTCCCGCTAaatttatgca | nd | [BPP], [CV(SM)], [SM] | [3], [4], [5] |
remote | AraC-arabinose | activator | araFp | 1986375 | 1986391 | -145.0 | aggctaatctTATGGATTAATCTGCTGtgcattcgac | nd | [AIBSCS], [APIORCISFBSCS], [BPP] | [3], [4], [5], [6] |
remote | AraC-arabinose | activator | araFp | 1986396 | 1986412 | -166.0 | ccaaagacaaCAAGGATTTCCAGGCTAatcttatgga | nd | [BPP], [CV(SM)], [SM] | [3], [4], [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cAMP | activator | araFp | 1986270 | 1986291 | -42.5 | tgtaattctgCGATGTGATATTGCTCTCCTATggagaattaa | nd | [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] | [3], [7], [8] |
Reference(s) |
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