RegulonDB RegulonDB 10.8: Operon Form
   

araFGH operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: araFGH
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: araFGH
Gene(s): araH, araG, araF   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITC] Inferred through co-regulation
Reference(s): [1] Maciag A., et al., 2011
Promoter
Name: araFp2
+1: 1986148
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 20
Sequence: aatgctttgttttccgattaatttaacgaatgtcattcgtttttgccctacacaaaacgaCactaaagctggagagaacca
                                          -10               +1                   
Evidence: [HTIM]
Reference(s): [1] Maciag A., et al., 2011


Transcription unit          
Name: araFGH
Synonym(s): OP00138, araFG-w1867-araH
Gene(s): araH, araG, araF   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITC] Inferred through co-regulation
Reference(s): [1] Maciag A., et al., 2011
[2] Scripture JB., et al., 1987
Promoter
Name: araFp
+1: 1986238
Sigma Factor: Sigma70, Sigma38
Distance from start of the gene: 110
Sequence: aattctgcgatgtgatattgctctcctatggagaattaatttctcgctaaaactatgtcaAcacagtcacttatcttttag
                             -35                      -10   +1                   
Evidence: [TIM]
Reference(s): [3] Hendrickson W., et al., 1990
[1] Maciag A., et al., 2011
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal AraC-arabinose activator araFp 1986300 1986316 -70.0 ccgctaaattTATGCACGTTCTCACTGtaattctgcg nd [APIORCISFBSCS], [BPP] [3], [5], [6], [7]
proximal AraC-arabinose activator araFp 1986321 1986337 -91.0 ggctttccctTATGTCTTTTCCCGCTAaatttatgca nd [BPP], [CV(SM)], [SM] [3], [4], [5]
remote AraC-arabinose activator araFp 1986375 1986391 -145.0 aggctaatctTATGGATTAATCTGCTGtgcattcgac nd [AIBSCS], [APIORCISFBSCS], [BPP] [3], [4], [5], [6]
remote AraC-arabinose activator araFp 1986396 1986412 -166.0 ccaaagacaaCAAGGATTTCCAGGCTAatcttatgga nd [BPP], [CV(SM)], [SM] [3], [4], [5]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP activator araFp 1986270 1986291 -42.5 tgtaattctgCGATGTGATATTGCTCTCCTATggagaattaa nd [APIORCISFBSCS], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [SM] [3], [7], [8]





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