RegulonDB RegulonDB 10.8: Operon Form
   

ubiG operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ubiG
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ubiG
Synonym(s): OP00168
Gene(s): ubiG   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Gibert I., et al., 1988
Promoter
Name: ubiGp
+1: 2339539
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 28
Sequence: gcgcagtttgaggtaaacctatacgctttattcacatccaatgcctgatatactcgtttgTcttgccaattacggagtaga
                           -35                   -10        +1                   
Evidence: [HIPP]
[RS-EPT-CBR]
Reference(s): [2] Salgado H, et al., 2012
[3] Wu G., et al., 1992
TF binding sites (TFBSs)
[CRP,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd CRP-cAMP activator ubiGp nd nd nd nd nd [GEA] [1]


Evidence    

 [HIPP] Human inference of promoter position

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [GEA] Gene expression analysis


Reference(s)    

 [1] Gibert I., Llagostera M., Barbe J., 1988, Regulation of ubiG gene expression in Escherichia coli., J Bacteriol 170(3):1346-9

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [3] Wu G., Williams HD., Zamanian M., Gibson F., Poole RK., 1992, Isolation and characterization of Escherichia coli mutants affected in aerobic respiration: the cloning and nucleotide sequence of ubiG. Identification of an S-adenosylmethionine-binding motif in protein, RNA, and small-molecule methyltransferases., J Gen Microbiol 138(10):2101-12

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