RegulonDB RegulonDB 10.6.3: Operon Form
   

fucAO operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: fucAO
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: fucAO
Synonym(s): OP00179
Gene(s): fucO, fucA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
[LTED] Length of transcript experimentally determined
Reference(s): [1] Chen YM., et al., 1989
[2] Conway T., et al., 1989
Promoter
Name: fucAp
+1: 2933854
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 166
Sequence: aatgaccgttttgataaatatttttaagagcggtcatttttaatggggttataaaaagagAacttgcagttatttactgtg
                        -10                       -35       +1                   
Evidence: [AIPP]
Reference(s): [3] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd CRP-cAMP activator fucAp nd nd nd nd nd [AIBSCS], [GEA], [IMP] [4], [5]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd FucR-L-fuculose-1-P activator fucAp nd nd nd nd nd [GEA], [IMP] [5], [6]


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
Evidence: [ICA] Inferred by computational analysis
Reference(s): [7] null null
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -11.7 2933873 2933912 aatagaaaaaTGACCGTTTTGATAAATATTTTTAAGAGCGGTCATTTTTaatggggtta
  anti-terminator -6.9 2933908 2933942 tgccgaaaacGGTCATTCCGGGCTTGGAGGAATAGAAAAATGACcgttttgata
  anti-anti-terminator -3.5 2933970 2933989 aaataaatcaTAAAAAACACAAATCAGATgaccgtatta
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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