RegulonDB RegulonDB 10.10: Operon Form
   

cynTSX operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: cynTSX
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: cynTS
Gene(s): cynT, cynS   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
[LTED] Length of transcript experimentally determined
Reference(s): [1] Sung YC., et al., 1988
Promoter
Name: cynTp
+1: 358773
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 26
Sequence: atggaactcatcataaatgagacttttaccttatgacaatcggcgagtagtctgcctctcAttccagagacagacagaggt
                          -35                   -10         +1                   
Evidence: [HIPP]
[ICWHO]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[3] Lamblin AF., et al., 1993
[1] Sung YC., et al., 1988
Terminator(s)
Type: rho-independent
Sequence: ttacccgcaaAGTGCGCTGCTGCTTAGCAGCGCACTgcttggtggg
Reference(s): [1] Sung YC., et al., 1988
TF binding sites (TFBSs)
[CynR,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CynR-cyanate activator cynTp 358700 358708 -69.0 ttcgcaacctATAAGTAAAtccaatggaa nd [GEA], [APIORCISFBSCS], [BPP] [4]
proximal CynR-cyanate activator cynTp 358738 358746 -31.0 aatgagacttTTACCTTATgacaatcggc nd [APIORCISFBSCS], [BPP] [4]


Transcription unit          
Name: cynTSX
Synonym(s): OP00193
Gene(s): cynT, cynS, cynX   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
[LTED] Length of transcript experimentally determined
Reference(s): [5] Anderson PM., et al., 1990
[4] Lamblin AF., et al., 1994
[1] Sung YC., et al., 1988
Promoter
Name: cynTp
+1: 358773
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 26
Sequence: atggaactcatcataaatgagacttttaccttatgacaatcggcgagtagtctgcctctcAttccagagacagacagaggt
                          -35                   -10         +1                   
Evidence: [HIPP]
[ICWHO]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[3] Lamblin AF., et al., 1993
[1] Sung YC., et al., 1988
Terminator(s)
Type: rho-independent
Sequence: gaacttgtagGCCTGATAAGCGCAGCGTATCAGGCaatttttata
Reference(s): [1] Sung YC., et al., 1988
TF binding sites (TFBSs)
[CynR,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CynR-cyanate activator cynTp 358700 358708 -69.0 ttcgcaacctATAAGTAAAtccaatggaa nd [GEA], [APIORCISFBSCS], [BPP] [4]
proximal CynR-cyanate activator cynTp 358738 358746 -31.0 aatgagacttTTACCTTATgacaatcggc nd [APIORCISFBSCS], [BPP] [4]


Evidence    

 [HIPP] Human inference of promoter position

 [ICWHO] Inferred computationally without human oversight

 [TIM] Transcription initiation mapping

 [GEA] Gene expression analysis

 [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [BPP] Binding of purified proteins


Reference(s)    

 [1] Sung YC., Fuchs JA., 1988, Characterization of the cyn operon in Escherichia coli K12., J Biol Chem 263(29):14769-75

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [3] Lamblin AF., Fuchs JA., 1993, Expression and purification of the cynR regulatory gene product: CynR is a DNA-binding protein., J Bacteriol 175(24):7990-9

 [4] Lamblin AF., Fuchs JA., 1994, Functional analysis of the Escherichia coli K-12 cyn operon transcriptional regulation., J Bacteriol 176(21):6613-22

 [5] Anderson PM., Sung YC., Fuchs JA., 1990, The cyanase operon and cyanate metabolism., FEMS Microbiol Rev 7(3-4):247-52

RegulonDB