Name: |
fdhF |
Synonym(s): |
OP00207 |
Gene(s): |
fdhF
Genome Browser
M3D Gene expression
COLOMBOS
|
Note(s): |
This transcription unit is repressed and induced anaerobically. It is repressed in the presence of nitrate and induced in the presence of formate Wang H,2003 Based on qRT-PCR, it was found that three selenopolypeptide genes, fdnG, fdoG, and fdhF, were induced more than 2-fold by both 0.01 and 5 mM Na2SeO3 (sodium selenite) Campagne S, Marsh ME, Capitani G, Vorholt JA, Allain FH,2014
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Reference(s): |
[1] Rosentel JK., et al., 1995 [2] Wang H., et al., 2003
|
Promoter |
|
Name: |
fdhFp |
+1: |
4299407 |
Sigma Factor: |
Sigma54 Sigmulon |
Distance from start of the gene: |
41
|
Sequence: |
cccgtaatatcagggaatgaccccacataaaatgtggcataaaagatgcatactgtagtcGagagcgcgtatgcgtgattt -24 -12 +1
|
Evidence: |
[ICWHO] [TIM]
|
Reference(s): |
[3] Birkmann A., et al., 1987 [4] Huerta AM., et al., 2003 [5] Schlensog V., et al., 1994
|
Terminator(s) |
|
Type: |
rho-independent |
Sequence: |
tcgaatggatAAAAAAACAGCCTCCGAAAGGAGGCTGTAGAAAGgacggtatta |
Reference(s): |
[6] Bognar AL., et al., 1987
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
FhlA-formate |
activator |
fdhFp |
4299530
|
4299543
|
-129.5
|
gcgtgatggcTGTCACGCGGTATTtcgtttcgtc
|
[GEA]
|
[5]
|
FhlA-formate |
activator |
fdhFp |
4299505
|
4299518
|
-104.5
|
cgtttcgtcaCGTCAAAACTGACGacagcctgtt
|
[GEA]
|
[5]
|
FNR |
activator |
fdhFp |
nd
|
nd
|
nd
|
nd
|
[GEA]
|
[7]
|
NarP-phosphorylated |
activator |
fdhFp |
nd
|
nd
|
nd
|
nd
|
[GEA]
|
[2]
|
NarL-phosphorylated |
repressor |
fdhFp |
nd
|
nd
|
nd
|
nd
|
[GEA]
|
[2]
|