Name: |
fdnGHI |
Synonym(s): |
OP00216 |
Gene(s): |
fdnG, fdnH, fdnI
Genome Browser
M3D Gene expression
COLOMBOS
|
Note(s): |
Despite Rabin and Stewart Rabin RS,1993 reporting that NarP was a weak activator of the fdnGHI transcription unit, Wang and Gunsalus Wang H,2003 concluded that NarP cannot induce that expression, rather, NarP antagonizes the ability of NarL to activate the operon. This transcription unit is anaerobically induced in the presence of nitrate Wang H,2003 Based on qRT-PCR, it was found that three selenopolypeptide genes, fdnG, fdoG, and fdhF, were induced more than 2-fold by both 0.01 and 5 mM Na2SeO3 (sodium selenite) Campagne S, Marsh ME, Capitani G, Vorholt JA, Allain FH,2014 The transcription of the fdnI gene is induced during the first 24 h after the induction of nitrogen starvation Switzer A, Burchell L, McQuail J, Wigneshweraraj S,2020. |
Reference(s): |
[1] Berg BL., et al., 1991 [2] Li J., et al., 1994 [3] Li J., et al., 1992
|
Promoter |
|
Name: |
fdnGp |
+1: |
1547372 |
Sigma Factor: |
Sigma70 Sigmulon |
Distance from start of the gene: |
29
|
Sequence: |
agatgttctttttgatttcgcgcaaaaagattcagaattttactgttagtttcctcgcgcAgtaatacccctgaaaaaaga -35 -10 +1
|
Evidence: |
[ICWHO] [RS-EPT-CBR] [TIM]
|
Reference(s): |
[4] Huerta AM., et al., 2003 [3] Li J., et al., 1992 [5] Salgado H, et al., 2012
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
remote |
NarL-phosphorylated
|
activator |
fdnGp |
1547245
|
1547251
|
-124.0
|
cctgtcaggcAGTGGTGcgtttttcta |
nd
|
[GEA], [APIORCISFBSCS], [BCE], [SM]
|
[2], [6], [7], [8], [9]
|
remote |
NarL-phosphorylated
|
activator |
fdnGp |
1547260
|
1547266
|
-109.0
|
tgcgtttttcTACCGCTattgaggtag |
nd
|
[GEA], [BCE], [SM]
|
[3], [9]
|
remote |
NarL-phosphorylated
|
activator |
fdnGp |
1547269
|
1547275
|
-100.0
|
ctaccgctatTGAGGTAggtcaatttg |
nd
|
[GEA], [APIORCISFBSCS], [BPP], [SM]
|
[6], [7], [8], [9]
|
proximal |
NarL-phosphorylated
|
activator |
fdnGp |
1547292
|
1547298
|
-77.0
|
tttgcgaaggCGGATTAttttgtggca |
nd
|
[GEA], [APIORCISFBSCS], [BCE], [SM]
|
[6], [7], [8], [9]
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
NarL-phosphorylated |
activator |
fdnGp |
1547245
|
1547251
|
-124.0
|
cctgtcaggcAGTGGTGcgtttttcta
|
[GEA]
|
[2], [6], [7], [8], [9]
|
NarL-phosphorylated |
activator |
fdnGp |
1547260
|
1547266
|
-109.0
|
tgcgtttttcTACCGCTattgaggtag
|
[GEA]
|
[3], [9]
|
NarP-phosphorylated |
repressor |
fdnGp |
1547255
|
1547270
|
-109.0
|
agtggtgcgtTTTTCTACCGCTATTGaggtaggtca
|
[GEA]
|
[7], [9]
|
NarL-phosphorylated |
activator |
fdnGp |
1547269
|
1547275
|
-100.0
|
ctaccgctatTGAGGTAggtcaatttg
|
[GEA]
|
[6], [7], [8], [9]
|
NarP-phosphorylated |
repressor |
fdnGp |
1547264
|
1547279
|
-100.0
|
tttttctaccGCTATTGAGGTAGGTCaatttgcgaa
|
[GEA]
|
[7], [9]
|
FNR |
activator |
fdnGp |
1547268
|
1547281
|
-97.5
|
tctaccgctaTTGAGGTAGGTCAAtttgcgaagg
|
[GEA]
|
[3]
|
FNR |
repressor |
fdnGp |
1547268
|
1547281
|
-97.5
|
tctaccgctaTTGAGGTAGGTCAAtttgcgaagg
|
[GEA]
|
[3]
|
NarL-phosphorylated |
activator |
fdnGp |
1547292
|
1547298
|
-77.0
|
tttgcgaaggCGGATTAttttgtggca
|
[GEA]
|
[6], [7], [8], [9]
|
FNR |
activator |
fdnGp |
1547323
|
1547336
|
-42.5
|
gatgttctttTTGATTTCGCGCAAaaagattcag
|
[GEA]
|
[3]
|