RegulonDB RegulonDB 10.10: Operon Form
   

gadY operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: gadY
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: gadY
Synonym(s): IS183
Gene(s): gadY   Genome Browser M3D Gene expression COLOMBOS
Note(s): The transcription of gadY appears to be increased under acidic growth conditions during the exponential phase in a RcsB-dependent manner, but not during stationary phase Johnson MD,2011
The RNA produced by the gadY gene has been observed mainly in the poles of the cell Kannaiah S, Livny J, Amster-Choder O,2019.
Evidence: [AISGDTU] Automated inference that a single-gene directon is a transcription unit
[BTEI] Boundaries of transcription experimentally identified
[LTED] Length of transcript experimentally determined
Reference(s): [1] Opdyke JA., et al., 2004
[2] Tramonti A., et al., 2008
Promoter
Name: gadYp
+1: 3664864
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 0
Sequence: atagcttatgtttataaaaaaatggctgatcttatttccagtaaaagttatatttaacttActgagagcacaaagtttccc
                          -35               -10             +1                   
Evidence: [AIBSCS]
[AIPP]
[ICWHO]
[IMP]
[TIM]
Reference(s): [3] Huerta AM., et al., 2003
[1] Opdyke JA., et al., 2004
Terminator(s)
Type: rho-independent
Sequence: ctatcctcttCCCGGTCCCCTATGCCGGGttttttttat
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal GadW repressor gadYp 3664804 3664823 -50.5 cgcacagcgtATAGCTTATGTTTATAAAAAaatggctgat nd [GEA] [2]
proximal GadW repressor gadYp 3664825 3664844 -29.5 ttataaaaaaATGGCTGATCTTATTTCCAGtaaaagttat nd [GEA] [2]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal GadX activator gadYp 3664804 3664823 -50.5 cgcacagcgtATAGCTTATGTTTATAAAAAaatggctgat nd [GEA] [2]
proximal GadX activator gadYp 3664825 3664844 -29.5 ttataaaaaaATGGCTGATCTTATTTCCAGtaaaagttat nd [GEA] [2]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd RcsB-phosphorylated activator gadYp nd nd nd nd nd [GEA], [BPP] [4]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd SdiA activator gadYp nd nd nd nd nd [GEA], [BPP] [5]





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