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Name: | dapB |
Gene(s): | dapB Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [IHBCE] Inferred by a human based on computational evidence |
Reference(s): | [1] Bouvier J., et al., 1984 |
Promoter | |
Name: | dapBp2 |
+1: | 28288 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 86 |
Sequence: |
tgcagtcattcatcgactcatgcctttcactgatatccctccctgtttatcattaatttcTaattatcagcgtttttggct -35 -10 +1 |
Evidence: |
[CV(RS-EPT-CBR)] [CV(TIM)] [RS-EPT-CBR] [TIM] |
Reference(s): |
[1] Bouvier J., et al., 1984 [2] Salgado H, et al., 2012 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | tattgattatAAAGGGCTTTAATTTTTGGCCCTTTtatttttggt |
Reference(s): | [1] Bouvier J., et al., 1984 |
Name: | dapB |
Gene(s): | dapB Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [IHBCE] Inferred by a human based on computational evidence |
Reference(s): | [1] Bouvier J., et al., 1984 |
Promoter | |
Name: | dapBp1 |
+1: | 28343 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 31 |
Sequence: |
atttctaattatcagcgtttttggctggcggcgtagcgatgcgctggttactctgaaaacGgtctatgcaaattaacaaaa -35 -10 +1 |
Note(s): | In the argO and dapB promoters, the lysine repression of ArgP-dependent transcription between argO and dapB is apparently different. In the dapBp1 promoter, lysine prevents binding of ArgP Bouvier J,2008 whereas in the argO promoter, lysine traps RNA polymerase recruitment by ArgP Laishram RS,2007. |
Evidence: |
[CV(RS-EPT-CBR)] [CV(TIM)] [HIPP] [RS-EPT-CBR] [TIM] |
Reference(s): |
[1] Bouvier J., et al., 1984 [3] Bouvier J., et al., 1991 [2] Salgado H, et al., 2012 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | tattgattatAAAGGGCTTTAATTTTTGGCCCTTTtatttttggt |
Reference(s): | [1] Bouvier J., et al., 1984 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | ArgP1 | activator | dapBp1 | 28252 | 28271 | -81.5 | gactcatgccTTTCACTGATATCCCTCCCTgtttatcatt | nd | [APIORCISFBSCS], [BCE], [BPP], [CV(GEA)], [CV(GEA)], [CV(GEA/SM)], [CV(SM)], [GEA], [IC], [SM] | [4], [5], [6] |
proximal | ArgP | activator | dapBp1 | 28272 | 28291 | -61.5 | atccctccctGTTTATCATTAATTTCTAATtatcagcgtt | nd | [BPP], [CV(SM)], [GEA], [SM] | [6] |
Note(s): |
1Based on EMSE, it was demonstrated that His6-ArgP has an apparent Kd of 35 nM for the binding of ArgP to the dapB regulatory region Bouvier J,2008 1Based on EMSE, it was demonstrated that His6-ArgP has an apparent Kd of 35 nM for the binding of ArgP to the dapB regulatory region Bouvier J,2008 |
Reference(s) |
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