|
|
| Operon |  |
|---|---|
| Name: | pepD |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | pepD |
| Gene(s): | pepD Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
| Reference(s): | [1] Henrich B., et al., 1990 |
| Promoter | |
| Name: | pepDp3 |
| +1: | 255737 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 21 |
| Sequence: |
cctgtcttgtgttgacaacattttctgctaaccctgtgacctgcaatactgttttgcgggTgatcgacaaggagacttaac -35 -10 +1 |
| Note(s): | Although Henrich B,1990 identified two promoters upstream of the pepD gene, he did not identify the pepDp3 promoter, which was found in the stationary phase of growth by Brombacher E,2003. |
| Evidence: |
[HIPP] [TIM] |
| Reference(s): | [2] Brombacher E., et al., 2003 |
| Note(s): | 1Since the CsgD-binding site overlaps the pepDp3 promoter and the transcription factor has a negative effect on the transcription of the pepD gene Brombacher E,2003, the regulatory effect of CsgD has been linked to the pepDp3 promoter, although an effect of the protein on the other promoters has not been discarded.1Since the CsgD-binding site overlaps the pepDp3 promoter and the transcription factor has a negative effect on the transcription of the pepD gene Brombacher E,2003, the regulatory effect of CsgD has been linked to the pepDp3 promoter, although an effect of the protein on the other promoters has not been discarded. |
| Name: | pepD |
| Gene(s): | pepD Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
| Reference(s): | [1] Henrich B., et al., 1990 |
| Promoter | |
| Name: | pepDp2 |
| +1: | 255776 |
| Distance from start of the gene: | 60 |
| Sequence: |
acgcgggataaagtggtattctcaaacatatctcgcaagcctgtcttgtgttgacaacatTttctgctaaccctgtgacct |
| Note(s): | Brombacher E,2003 could not identify the transcriptional start site of the pepDp2 promoter in the stationary phase of growth, but 39 bp downstream of this promoter, he found another promoter (pepDp3) that was not identified by Henrich B,1990. |
| Evidence: |
[CV(RS-EPT-CBR)] [CV(TIM)] [RS-EPT-CBR] [TIM] |
| Reference(s): |
[1] Henrich B., et al., 1990 [3] Salgado H, et al., 2012 |
| Name: | pepD |
| Gene(s): | pepD Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
| Reference(s): | [1] Henrich B., et al., 1990 |
| Promoter | |
| Name: | pepDp1 |
| +1: | 255809 |
| Distance from start of the gene: | 93 |
| Sequence: |
agtccgcgtctttttacgcactgcctctccctgacgcgggataaagtggtattctcaaacAtatctcgcaagcctgtcttg |
| Evidence: |
[CV(RS-EPT-CBR)] [CV(TIM)] [RS-EPT-CBR] [TIM] |
| Reference(s): |
[2] Brombacher E., et al., 2003 [1] Henrich B., et al., 1990 [3] Salgado H, et al., 2012 |
| Reference(s) |
|
|---|---|
[HIPP] Human inference of promoter position