|
|
| Operon |  |
|---|---|
| Name: | pepD |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | pepD |
| Gene(s): | pepD Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for pepD . This structure could regulate the expression of the gene, as observed for hemL gene expression Shao X, Zhang W, Umar MI, Wong HY, Seng Z, Xie Y, Zhang Y, Yang L, Kwok CK, Deng X,2020. |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
| Reference(s): | [1] Henrich B., et al., 1990 |
| Promoter | |
| Name: | pepDp3 |
| +1: | 255737 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 21 |
| Sequence: |
cctgtcttgtgttgacaacattttctgctaaccctgtgacctgcaatactgttttgcgggTgatcgacaaggagacttaac -35 -10 +1 |
| Note(s): | Although Henrich B,1990 identified two promoters upstream of the pepD gene, he did not identify the pepDp3 promoter, which was found in the stationary phase of growth by Brombacher E,2003. |
| Evidence: |
[HIPP] [ICWHO] [TIM] |
| Reference(s): |
[2] Brombacher E., et al., 2003 [3] Huerta AM., et al., 2003 |
| Name: | pepD |
| Gene(s): | pepD Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for pepD . This structure could regulate the expression of the gene, as observed for hemL gene expression Shao X, Zhang W, Umar MI, Wong HY, Seng Z, Xie Y, Zhang Y, Yang L, Kwok CK, Deng X,2020. |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
| Reference(s): | [1] Henrich B., et al., 1990 |
| Promoter | |
| Name: | pepDp2 |
| +1: | 255776 |
| Distance from start of the gene: | 60 |
| Sequence: |
acgcgggataaagtggtattctcaaacatatctcgcaagcctgtcttgtgttgacaacatTttctgctaaccctgtgacct |
| Note(s): | Brombacher E,2003 could not identify the transcriptional start site of the pepDp2 promoter in the stationary phase of growth, but 39 bp downstream of this promoter, he found another promoter (pepDp3) that was not identified by Henrich B,1990. |
| Evidence: |
[RS-EPT-CBR] [TIM] |
| Reference(s): |
[1] Henrich B., et al., 1990 [4] Salgado H, et al., 2012 |
| Name: | pepD |
| Gene(s): | pepD Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for pepD . This structure could regulate the expression of the gene, as observed for hemL gene expression Shao X, Zhang W, Umar MI, Wong HY, Seng Z, Xie Y, Zhang Y, Yang L, Kwok CK, Deng X,2020. |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
| Reference(s): | [1] Henrich B., et al., 1990 |
| Promoter | |
| Name: | pepDp1 |
| +1: | 255809 |
| Distance from start of the gene: | 93 |
| Sequence: |
agtccgcgtctttttacgcactgcctctccctgacgcgggataaagtggtattctcaaacAtatctcgcaagcctgtcttg |
| Evidence: |
[RS-EPT-CBR] [TIM] |
| Reference(s): |
[2] Brombacher E., et al., 2003 [1] Henrich B., et al., 1990 [4] Salgado H, et al., 2012 |
| Reference(s) |
|
|---|---|
[HIPP] Human inference of promoter position