RegulonDB RegulonDB 10.8: Operon Form
   

sohB operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: sohB
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: sohB
Gene(s): sohB   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Talukder AA., et al., 1996
Promoter
Name: sohBp1
+1: 1329284
Sigma Factor: Sigma70, Sigma38
Distance from start of the gene: 48
Sequence: aaatggatactttgtcatactttcgctgcaataacatctctgcgagacggcttaacatgcCtgttgtaaactgtgagccaa
                               -35                   -10    +1                   
Note(s): We assigned a putative transcription start site to this promoter based on the observation that the majority of the promoters, whose transcription start sites were determined experimentally, present a distance of 6 nucleotides between the transcription start site and the -10 box.
Evidence: [HIPP]
Reference(s): [1] Talukder AA., et al., 1996
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP repressor sohBp1 1329292 1329313 19.5 gcctgttgtaAACTGTGAGCCAAAGCGTTGTTtaaccaaggt nd [AIBSCS] [1]


Transcription unit          
Name: sohB
Gene(s): sohB   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Talukder AA., et al., 1996
Promoter
Name: sohBp2
+1: 1329301
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 31
Sequence: tactttcgctgcaataacatctctgcgagacggcttaacatgcctgttgtaaactgtgagCcaaagcgttgtttaaccaag
                       -35                        -10       +1                   
Note(s): We assigned a putative transcription start site to this promoter based on the observation that the majority of the promoters, whose transcription start sites were determined experimentally, present a distance of 6 nucleotides between the transcription start site and the -10 box.
Evidence: [HIPP]
[RS-EPT-CBR]
Reference(s): [2] Salgado H, et al., 2012
[1] Talukder AA., et al., 1996
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP repressor sohBp2 1329291 1329312 2.0 tgcctgttgtAAACTGTGAGCCAAAGCGTTGTttaaccaagg nd [AIBSCS] [1]





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