RegulonDB RegulonDB 10.8: Operon Form
   

sixA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: sixA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: sixA
Gene(s): sixA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: sixAp
+1: 2456999
Sigma Factor: Sigma70, Sigma24
Distance from start of the gene: 187
Sequence: cgtggggaaagtttttggaaaacaactgcaactgacctgcaataagaaggtcaaagctatAtgaatccgcgctgaatggcg
                             -35                   -10      +1                   
Evidence: [AIPP]
[CV(TIM)]
[IDA]
[TIM]
Reference(s): [1] Rezuchova B., et al., 2003
[2] Rhodius VA., et al., 2005
[3] Wade JT., et al., 2006


Evidence    

 [AIPP] Automated inference of promoter position

 [CV(TIM)] cross validation(TIM)

 [IDA] Inferred from direct assay

 [TIM] Transcription initiation mapping


Reference(s)    

 [1] Rezuchova B., Miticka H., Homerova D., Roberts M., Kormanec J., 2003, New members of the Escherichia coli sigmaE regulon identified by a two-plasmid system., FEMS Microbiol Lett 225(1):1-7

 [2] Rhodius VA., Suh WC., Nonaka G., West J., Gross CA., 2005, Conserved and variable functions of the sigmaE stress response in related genomes., PLoS Biol 4(1):e2

 [3] Wade JT., Roa DC., Grainger DC., Hurd D., Busby SJ., Struhl K., Nudler E., 2006, Extensive functional overlap between sigma factors in Escherichia coli., Nat Struct Mol Biol 13(9):806-14

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