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Name: | nagE | |||||||||
Gene(s): | nagE Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [BTEI] Boundaries of transcription experimentally identified [PM] Polar mutation |
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Reference(s): |
[1] Peri KG., et al., 1988 [2] Plumbridge J., et al., 1991 [3] Plumbridge JA. 1991 [4] Rogers MJ., et al., 1988 |
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Promoter | ||||||||||
Name: | nagEp | |||||||||
+1: | 703840 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 104 | |||||||||
Sequence: |
actcacaaaagacacgcgtttaatttgcgatacgaattaaattttcacacactctgtagcAgatgatctaacaatctgatt -35 -10 +1 |
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Evidence: |
[ICWHO] [RS-EPT-CBR] [TIM] |
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Reference(s): |
[5] Huerta AM., et al., 2003 [2] Plumbridge J., et al., 1991 [6] Plumbridge J., et al., 1993 [7] Plumbridge J., et al., 1998 [4] Rogers MJ., et al., 1988 [8] Salgado H, et al., 2012 |
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Terminator(s) | ||||||||||
Type: | rho-independent | |||||||||
Sequence: | caacaatgacAAGCGGTGGAGATCTTCTCTGCCGCTTtttttttcat | |||||||||
Reference(s): | [4] Rogers MJ., et al., 1988 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | nagEp | 703768 | 703789 | -61.5 | aataacgataTTTGGTGACAAAACTCACAAAAgacacgcgtt | nd | [GEA], [APIORCISFBSCS], [BCE], [BPP] | [2], [6], [7], [10] |
proximal | CRP-cyclic-AMP | activator | nagEp | 703802 | 703823 | -27.5 | cacgcgtttaATTTGCGATACGAATTAAATTTtcacacactc | nd | [APIORCISFBSCS], [BPP] | [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | repressor | nagEp | 703768 | 703789 | -61.5 | aataacgataTTTGGTGACAAAACTCACAAAAgacacgcgtt | nd | [GEA], [APIORCISFBSCS], [BCE], [BPP] | [2], [6], [7], [10] |
proximal | CRP-cyclic-AMP | repressor | nagEp | 703802 | 703823 | -27.5 | cacgcgtttaATTTGCGATACGAATTAAATTTtcacacactc | nd | [APIORCISFBSCS], [BPP] | [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | NagC | repressor | nagEp | 703704 | 703726 | -125.0 | aatccgacctGATTTTTTGAATGATAAAATAAGttttctggtt | nd | [GEA], [BPP], [SM] | [6], [7], [9], [10] |
proximal | NagC | repressor | nagEp | 703798 | 703820 | -31.0 | aagacacgcgTTTAATTTGCGATACGAATTAAAttttcacaca | nd | [GEA], [BPP], [SM] | [6], [7], [9], [10] |
Reference(s) |
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