RegulonDB RegulonDB 11.1: Operon Form
   

garD operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: garD
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: garD
Gene(s): garD   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified
Reference(s): [1] Monterrubio R., et al., 2000
Promoter
Name: garDp
+1: Unknown
Evidence: [IC]
Reference(s): [1] Monterrubio R., et al., 2000
TF binding sites (TFBSs)
[CdaR,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd CdaR activator garDp nd nd nd nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [1], [2]


Evidence    

 [IC] Inferred by curator

 [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis


Reference(s)    

 [1] Monterrubio R., Baldoma L., Obradors N., Aguilar J., Badia J., 2000, A common regulator for the operons encoding the enzymes involved in D-galactarate, D-glucarate, and D-glycerate utilization in Escherichia coli., J Bacteriol 182(9):2672-4

 [2] Sampaio MM., Chevance F., Dippel R., Eppler T., Schlegel A., Boos W., Lu YJ., Rock CO., 2004, Phosphotransferase-mediated transport of the osmolyte 2-O-alpha-mannosyl-D-glycerate in Escherichia coli occurs by the product of the mngA (hrsA) gene and is regulated by the mngR (farR) gene product acting as repressor., J Biol Chem 279(7):5537-48

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