RegulonDB RegulonDB 10.7: Operon Form
   

idnK operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: idnK
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: idnK
Gene(s): idnK   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [1] Bausch C., et al., 2004
Promoter
Name: idnKp
+1: 4494597
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 26
Sequence: tcttatcagtagaaataaaaaaacgtgaaattattatgccgccaggcgtagtatcgcagcAggtaagatgattcaggagat
                         -35                     -10        +1                   
Evidence: [TIM]
Reference(s): [1] Bausch C., et al., 2004
[2] Tsunedomi R., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote CRP-cAMP activator idnKp 4494466 4494488 -120.5 aactgtcattATTTGTGATGAAGATCACGTCAGaaaattgtta nd [AIBSCS], [APIORCISFBSCS], [GEA] [1], [2], [3], [4]
proximal CRP-cAMP activator idnKp 4494516 4494537 -70.5 atgttacgcaTAACGTGATGTGCCTTGTAATTcttatcagta nd [APIORCISFBSCS], [GEA] [1], [2], [3]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote GntR repressor idnKp 4494484 4494503 -103.5 tgaagatcacGTCAGAAAATTGTTACATTActatgttacg nd [APIORCISFBSCS], [GEA] [2]
proximal GntR repressor idnKp 4494504 4494523 -83.5 tgttacattaCTATGTTACGCATAACGTGAtgtgccttgt nd [AIBSCS], [APIORCISFBSCS], [GEA] [2], [3], [6]
proximal GntR repressor idnKp 4494534 4494553 -53.5 tgtgccttgtAATTCTTATCAGTAGAAATAaaaaaacgtg nd [AIBSCS], [APIORCISFBSCS], [GEA] [2], [6]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal IdnR activator idnKp 4494506 4494521 -83.5 ttacattactATGTTACGCATAACGTgatgtgcctt nd [AIBSCS], [GEA] [1], [2], [5]





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